Pairwise Alignments

Query, 472 a.a., putative membrane efflux protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 423 a.a., Arabinose efflux permease from Sphingomonas koreensis DSMZ 15582

 Score =  366 bits (939), Expect = e-106
 Identities = 176/389 (45%), Positives = 265/389 (68%), Gaps = 3/389 (0%)

Query: 81  RITFSILIALSLSHCLNDLLQSVISAAYPLFKDDLGLNFAQIGLITLVYQLSASVFQPIT 140
           ++   I+ A++++H LNDL+Q+V+ A YP+ K+   L+F QIG I LVYQ +AS+ QP  
Sbjct: 26  KLVVQIVGAVAVAHLLNDLIQAVLPAIYPMLKEKYRLSFGQIGWIALVYQFTASLLQPWI 85

Query: 141 GIIFDKHPVAWSLPIGMSFTMIGMINLAFSNNLYWMLISVFLIGIGSSVLHPEASRITFL 200
           G+  DK P+ + LP+GM  T+ G+  LA + +   ++++  +IG+GS+  HPEASR+  +
Sbjct: 86  GLYTDKRPLPYLLPLGMVVTLAGIGGLAIAGSYAALILASAVIGVGSATFHPEASRVARM 145

Query: 201 ASGGKRGLAQSLFQVGGNLGGSLGPLLVALLVAPYGREHLAVFALFALAAIGVMYPICKW 260
           ASGG+ G AQS FQVGGN G +LGP++ + +V P+G+  +   A  A+AAI V++ + +W
Sbjct: 146 ASGGRFGTAQSAFQVGGNTGSALGPIIASAIVLPFGQTSVGWLAFAAIAAIWVLFGVTRW 205

Query: 261 YKSYLNRMKEQKATVKKAVHLPLPMDKTALSIGILLILIFSKYIYMASLTSYYTFYLIHK 320
               +     Q  T   +   P    +   ++  + IL+F+K+IY+ + T+Y+TFYLI +
Sbjct: 206 R---VRHSLAQTGTAAISTASPHSRREIVRALSAIGILMFAKFIYIGAFTNYFTFYLIER 262

Query: 321 FNVTVQESQLYLFIFLVATAIGTLLGGPIGDRVGRKYVIWASILGAAPFSLLMPHATLAW 380
           F +T +ESQ YLF FL A A+GT  GGP+GDR+GRK VIWAS LG APF++++PHA L W
Sbjct: 263 FELTARESQFYLFCFLAAVAVGTFAGGPVGDRIGRKAVIWASFLGVAPFAMVLPHANLFW 322

Query: 381 TIILSFCVGLMLSSAFPAILLYAQELLPTKLGLISGLFFGFAFGVAGIASAVLGNMADKF 440
           T   +  +GL++SSAF A+++YAQEL+P ++GL+SGL FG  FG++G+ +A LG +AD  
Sbjct: 323 TAGFAILIGLIMSSAFAALVVYAQELVPGRVGLVSGLMFGLMFGISGVGAAGLGQLADLN 382

Query: 441 GIESVYNVCAYMPLLGLVTFFLPNLKKQK 469
           GI  VY  CAY+PLLGL T  LP+ + +K
Sbjct: 383 GIVWVYKFCAYLPLLGLATILLPSFEGRK 411