Pairwise Alignments

Query, 585 a.a., V-type ATP synthase subunit A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 446 a.a., flagellum-specific ATP synthase (RefSeq) from Shewanella loihica PV-4

 Score =  100 bits (250), Expect = 1e-25
 Identities = 70/263 (26%), Positives = 123/263 (46%), Gaps = 16/263 (6%)

Query: 181 EGNDIPVTMIQKWPVKRAMTNYKEKPRPF------KLLETGVRVIDTLNPIVEGGTGFIP 234
           +GN  P+  + +    +  T +     P       + L+ GVR I+ +  + +G    + 
Sbjct: 110 DGNGAPIDGLGQLHTDQKATRHATMLNPLARRAISEPLDVGVRAINAMLTVGKGQRMGLF 169

Query: 235 GPFGTGKTVLQHAISKQAEADIVIIAACGERANEVVEIFTEFPELVDPHTGRKLMERTII 294
              G GK+VL   +++   AD++++   GER  EV E   E         G +   R+++
Sbjct: 170 AGSGVGKSVLLGMMTRGTTADVIVVGLVGERGREVKEFIEEI-------LGAEGRSRSVV 222

Query: 295 IANTSNMPVAAREASVYTAMSLAEYYRSMGLKVLLMADSTSRWAQALREMSNRMEELPGP 354
           +A  ++     R  +  T+  +AEY+R +G  VLL+ DS +R+AQA RE++  + E P  
Sbjct: 223 VAAPADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPAT 282

Query: 355 DAFPMDISAIISNFYGRAGYVKLNNDETGSITFIGTVSPAGGNLKEPVTENTKKVARCFY 414
             +P  + A +     RAG         GSIT   TV   G +L++P+ +  + +     
Sbjct: 283 KGYPPSVFAKLPKLVERAGN---GGAGQGSITAFYTVLTEGDDLQDPIADAARAILDGHI 339

Query: 415 ALEQDRADKKRYPAVNPIDSYSK 437
            L +  AD   YPA++   S S+
Sbjct: 340 VLSRALADSGHYPAIDVEASISR 362



 Score = 34.7 bits (78), Expect = 8e-06
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 8   SGVIANMVTLVVDGPVAQ---NEICYISTGGDRLMAEVIKVVGSHVYVQVFESTRGLKVG 64
           SG +  +V L ++    +     +C I+T    L+AEVI      +Y+   E   G+  G
Sbjct: 27  SGQLVRVVGLTLEATGCKAPVGSLCSIATMAGDLIAEVIGFDDKLLYLMPIEELSGVMPG 86

Query: 65  AEAEFTGHMLEVTLGPGMLSKNYDG 89
           A+    G    + +G G+L +  DG
Sbjct: 87  AKVTPLGEQTGLNVGMGLLGRVLDG 111