Pairwise Alignments

Query, 585 a.a., V-type ATP synthase subunit A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 438 a.a., type III secretion system ATPase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  106 bits (264), Expect = 2e-27
 Identities = 79/293 (26%), Positives = 135/293 (46%), Gaps = 20/293 (6%)

Query: 153 MNGTATVKTIMPEGDYKI----EDTIAILTDEEGNDI----PVTMIQKWPVKRAMTNYKE 204
           + G +    ++P G+       ED +  + D  G  +    P+    ++PV     N  +
Sbjct: 78  LQGVSPATEVIPTGEILSIPVGEDLLGRVLDGLGEPMDGGPPLKPRTRYPVYAQPPNPMQ 137

Query: 205 KPRPFKLLETGVRVIDTLNPIVEGGTGFIPGPFGTGKTVLQHAISKQAEADIVIIAACGE 264
           +    + +  G+RV+D +    EG    I    G GK+ L  +I K   AD+ ++A  GE
Sbjct: 138 RRIIDRPISLGLRVLDGVLTCGEGQRMGIFAAAGGGKSTLLSSIIKGCSADVCVLALIGE 197

Query: 265 RANEVVEIFTEFPELVDPHTGRKLMERTIIIANTSNMPVAAREASVYTAMSLAEYYRSMG 324
           R  EV        E ++   G +  ++ +++ +TS+     R  + YTA ++AEY+R   
Sbjct: 198 RGREV-------REFIEHDLGPEGRKKAVLVVSTSDRSSMERLKAAYTATAIAEYFRDQR 250

Query: 325 LKVLLMADSTSRWAQALREMSNRMEELPGPDAFPMDISAIISNFYGRAGYVKLNNDETGS 384
             VLLM DS +R+ +A RE+     E P    FP  + + +     RAG     N + GS
Sbjct: 251 RSVLLMMDSVTRFGRAQREIGLAAGEPPTRRGFPPSVFSTLPRLMERAG-----NSDKGS 305

Query: 385 ITFIGTVSPAGGNLKEPVTENTKKVARCFYALEQDRADKKRYPAVNPIDSYSK 437
           IT + TV   G ++ EP+ + T+ +      L +  A    YPA++   S S+
Sbjct: 306 ITALYTVLVEGDDMTEPIADETRSILDGHIVLSRKLAAANHYPAIDVQASVSR 358



 Score = 36.2 bits (82), Expect = 3e-06
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 4   KGTVSGVIANMVTLVVDGPVAQNEICYISTGGDR--LMAEVIKVVGSHVYVQVFESTRGL 61
           +G V  V+  ++  VV G V   E+C +    +   L AEV+  V     +      +G+
Sbjct: 23  RGRVEQVVGTIIRAVVPG-VKVGELCILRNPWENWTLRAEVVGFVKQVALLTPLGDLQGV 81

Query: 62  KVGAEAEFTGHMLEVTLGPGMLSKNYDGLQNDLD 95
               E   TG +L + +G  +L +  DGL   +D
Sbjct: 82  SPATEVIPTGEILSIPVGEDLLGRVLDGLGEPMD 115