Pairwise Alignments

Query, 449 a.a., spermidine/putrescine ABC transporter (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 366 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  130 bits (328), Expect = 5e-35
 Identities = 100/353 (28%), Positives = 171/353 (48%), Gaps = 41/353 (11%)

Query: 1   MKRIVAVNLFLLVLAGFLSGCYNSGEPRERVLKIYNWADYIGEGVLEDFQAYYKEQTGED 60
           MK +  +    LV AG  +    S E    V+++YNW+DYI E  L +F+    ++TG  
Sbjct: 1   MKLLKKMTTLALVTAGVFTSSVVSAE---EVVRVYNWSDYIAEDTLANFE----KETG-- 51

Query: 61  IRIVYQTFDINEIMLTKIEKGHEDFDVVCPSEYIIERMLKKHLLLPIDTTFAHSPNYMNN 120
           I+++Y  FD NE++  K+  G   +D+V PS   + + +K      +D +     N+  N
Sbjct: 52  IKVIYDVFDSNEVVEAKLLSGRSGYDIVVPSNNFLAKQIKAGAFQKLDQS--QLTNH-KN 108

Query: 121 VSPFIREQINKLSQPGEEASRYAVCYMWGTAGILYNRAYVP-----DSDAFSWECLWDKK 175
           ++P + +Q+    +  +  + +AV Y+WGT GI YN A V      D+   S E +++ K
Sbjct: 109 LNPELMKQL----ETADPRNEHAVPYLWGTTGIGYNEAKVKQVLGEDAPVDSLELIFNPK 164

Query: 176 YAGKIL-----MKDSYRDAYGTAVIYAHAKELEEGTVTVEDLMNDYSPRAMEVAEKYLKA 230
           YA KI      + DS  +    A+IY     L+  +   ED       +A EV  K    
Sbjct: 165 YAEKIAKCGFSLLDSADEMLPMAMIYLG---LDPNSTKSEDYA-----KAGEVMAK---- 212

Query: 231 MKPNIAGWEADFGKEMMTKNKAWLNMTWSGDAIWAIEEANAV--GVDLDYVVPKEGSNIW 288
           ++P +  + +      +      +   +SGD   A   A     G  + Y +PKEGSN+W
Sbjct: 213 IRPFVTYFHSSRYITDLANGDICVAFGYSGDVFQAAARAEEAENGNVIGYAIPKEGSNLW 272

Query: 289 YDGWVIPKYAKNPVAASYFINFMCRPDIALRNMDFCGYVS-SIATPEILEEKV 340
           +D   IP  AKN   A  FIN++ RP++     ++  Y + ++   E+++E++
Sbjct: 273 FDMLAIPADAKNVKNAHTFINYLLRPEVIAPITNYVAYANPNVPAQELVDEEI 325