Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 531 a.a., ABC transporter-related protein (RefSeq) from Shewanella loihica PV-4

 Score =  479 bits (1233), Expect = e-139
 Identities = 232/532 (43%), Positives = 357/532 (67%), Gaps = 3/532 (0%)

Query: 1   MITVSNVSVQFGKRVLFNDVNLKFTSGNCYGIIGANGAGKSTFLRTIYGDLDPTTGTIAL 60
           MIT +N+++QFG + LF ++++KF  GN YG+IGANG GKSTF++ + G+L+PT+G ++L
Sbjct: 1   MITTANITMQFGSKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGELEPTSGNVSL 60

Query: 61  GPGERLSVLSQDHFKWDAYTVMDTVMMGHTVLWDIMKQREVLYAKEDFTDEDGLKVSELE 120
              ERL  LSQ+ F ++ + V+DTV+MGHT LW + ++R+ +Y+  + ++EDG+KV+ELE
Sbjct: 61  DVNERLGKLSQNQFGYEEFNVVDTVIMGHTELWKVKQERDRIYSLPEMSEEDGIKVAELE 120

Query: 121 EKFAELDGWNAESDAAMLLSGLGIKEDKHYTLMGELSGKEKVRVMLAQALYGNPDNLLLD 180
            +FAE+DG+ AES A  LL G+GI  ++H+ LM E++   K+RV+LAQAL+ +PD LLLD
Sbjct: 121 MEFAEMDGYTAESRAGELLLGVGIPLEQHFGLMSEIAPGFKLRVLLAQALFSDPDVLLLD 180

Query: 181 EPTNDLDMETVTWLEEYLSNFEHTVLVVSHDRHFLDSVCTHTVDIDYGKINMFAGNYSFW 240
           EPTN+LD++T+ WL+E L+    T++++SHDR+FL+SVCTH  D+DYG++ ++ GNY  +
Sbjct: 181 EPTNNLDIDTIRWLQEMLNQRNSTMIIISHDRYFLNSVCTHMADLDYGELRVYPGNYDEY 240

Query: 241 YESSQLALRQQQNQKAKAEEKKKELEEFIRRFSANVAKSKQTTSRKKMLEKLNVEEIKPS 300
             ++  A  +  +  AK + +  EL+ F+ RFSAN +K+KQ TSR K +EK+ +EE+K S
Sbjct: 241 MTAASQARERLLSDNAKKKAQIAELQGFVARFSANASKAKQATSRAKQIEKIKLEEVKAS 300

Query: 301 SRKYPGIIFTPEREPGNQILEVSGLSKKTEEGVVLFSDVNFNIEKGDKVVFLSRNPRAMT 360
           SR  P I F  E++     L V  LSK  ++G  LF D N   E G+++  L  N    T
Sbjct: 301 SRVNPFIRFEQEKKLFRNALVVEELSKGYDDG-PLFKDFNLIAEVGERIAVLGENGVGKT 359

Query: 361 AFFEIINGNMKPDAGQFNWGVTITTAYLPLDNTDFFNTDLNLVDWLSQF--GEGNEVYMK 418
                +  ++  D G   W       Y   D+   F  D+ L DW+SQ+   E ++  ++
Sbjct: 360 TMLRTLIHDIPQDTGTIQWSENSAIGYYAQDHESDFENDMTLFDWMSQWRKPEDDDQSVR 419

Query: 419 GFLGRMLFSGEEVLKKVSVLSGGEKMRCMIARMQLRNANCLILDTPTNHLDLESIQAFNN 478
           G+LGRMLFS +++ K V VLSGGEK R +  ++ ++  N L++D PTNHLD+ESI++ NN
Sbjct: 420 GYLGRMLFSSDDIKKSVRVLSGGEKGRMLFGKLIMQKPNILVMDEPTNHLDMESIESLNN 479

Query: 479 NLKTYKGNILFSSHDHEFIQTVANRIIELTPNGIIDKMMEYDEYITSDHIKE 530
            L+ Y+G ++F SHD  F+ ++A RIIE+TP G+ D    YDE++ S  ++E
Sbjct: 480 ALEMYEGTLIFVSHDRAFVSSLATRIIEITPQGVNDFKGTYDEFLRSKGVEE 531