Pairwise Alignments

Query, 409 a.a., periplasmic component of efflux system (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  103 bits (258), Expect = 6e-27
 Identities = 94/326 (28%), Positives = 148/326 (45%), Gaps = 41/326 (12%)

Query: 49  VTATGTIEPVIEVEVGTQVSGIIDKIYVDYNSVVTKGQLIAEMDRVTLQSELASQQATYD 108
           + A G IEP   V + T+ +G+ID+I  +  + V K Q +  +D    ++ L S +A   
Sbjct: 58  IEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLP 117

Query: 109 GAKAEFEYQKKNYERSKGLHDKSLISDTDYEQALYNYQKAKSAFDSSKASLAKAERNLSY 168
            AKA+       YER KGL  K  IS   Y++A  +Y    +  +S KA++A+ E     
Sbjct: 118 AAKAK-------YERYKGLFAKGSISKESYDEAEASYYALSADIESLKATIARRE----- 165

Query: 169 ATITSPIDGVVISRDVEAGQTVASGFETPTLFTIAADLTQMQVVADVDEADIGGIEEGQR 228
             I +P  GV+  R+V  GQ +  G +   L     D + M++   V + DI  I   Q 
Sbjct: 166 --IKAPFAGVIGIRNVFLGQYLQPGTDIVRL----EDTSVMRLRFTVPQRDISRISLDQE 219

Query: 229 ASFTVDAYPNDVFDGVVTQIRLGDASSSSSASSSTSTVVTYEVVISAPNPDLKLKPRLTA 288
               VDAYP   F G ++ I          A S  S ++  +V    PN D KL+  + A
Sbjct: 220 VDIFVDAYPQTSFKGSISAI--------EPAVSVQSGLI--QVQADIPNSDGKLRSGMFA 269

Query: 289 NVTIFILDKKDVLSVPNRALRFTPEAPLIGKN-DIVKDCEGEHKVWTREGTTFTAHPVEI 347
              I +   ++ +++P  A+ +T    L G N  IV +  GE +V          H V++
Sbjct: 270 RANIILPKLENQVTLPQTAITYT----LYGDNVYIVSEENGEKRV--------QQHVVKV 317

Query: 348 GISNGISTEIISGVAEGTKVITEATI 373
           G  +     I+ GV  G  V+T   +
Sbjct: 318 GERSESIAHILEGVKPGDVVVTTGQV 343