Pairwise Alignments

Query, 409 a.a., periplasmic component of efflux system (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 383 a.a., macrolide transporter subunit MacA from Pseudomonas fluorescens SBW25-INTG

 Score =  152 bits (384), Expect = 2e-41
 Identities = 119/392 (30%), Positives = 184/392 (46%), Gaps = 33/392 (8%)

Query: 4   KKIILIAVAVAVVVGGGIWFFTGSPAKHKVMYASATVSKGDISNSVTATGTIEPVIEVEV 63
           +K+ ++AV    +   G+  +T         Y +AT  +GDI N+V ATG +E + +V+V
Sbjct: 7   RKLGMLAVLTVAI---GLIIYTVQAPADTPQYLTATAERGDIENAVLATGLLEGIKQVDV 63

Query: 64  GTQVSGIIDKIYVDYNSVVTKGQLIAEMDRVTLQSELASQQATYDGAK-------AEFEY 116
           G QVSG +  + V     V KGQ +AE+D + LQ+ L   Q   +  +       A+ + 
Sbjct: 64  GAQVSGQLKSLKVKVGDKVKKGQWLAEIDPLILQNTLRKAQVDEENLQAQRRATAAQLKQ 123

Query: 117 QKKNYERSKGLHDKSLISDTDYEQALYNYQ-------KAKSAFDSSKASLAKAERNLSYA 169
            K  YER KGL D   +S  D+E A   +Q          +   S+   +  A+ NL+Y 
Sbjct: 124 AKSVYERYKGLQDDESVSRQDFEDAESTFQVQQANLLSLDAQIKSAHIQIDTAKVNLAYT 183

Query: 170 TITSPIDGVVISRDVEAGQTVASGFETPTLFTIAADLTQMQVVADVDEADIGGIEEGQRA 229
            I +PIDG V+    + GQTV +    P L  + ADL  M V A V EAD+  I  GQ+ 
Sbjct: 184 RIVAPIDGDVVGIVTQEGQTVIASQLAPVLLKL-ADLDTMTVKAQVSEADVIHISPGQQV 242

Query: 230 SFTVDAYPNDVFDGVVTQIRLGDASSSSSASSST---STVVTYEVVISAPNPDLKLKPRL 286
            FT+    +  +   +        +   + ++ T   +T V Y  +   PNPD +L+  +
Sbjct: 243 YFTILGEADKRYYAKLRGTEPAPQNFLETQAAGTPKQNTAVFYNALFDVPNPDHRLRIAM 302

Query: 287 TANVTIFILDKKDVLSVPNRALRFTPEAPLIGKNDIVKDCEGEHKVWTREGTTFTAHPVE 346
           TA V I       VL     AL   P A L  +N+   D     +V   +G    +  V+
Sbjct: 303 TAQVRI-------VLDTAQAAL-MVPVAALGARNN---DGSYPLRVLDAKGKA-VSRDVK 350

Query: 347 IGISNGISTEIISGVAEGTKVITEATIGAMPG 378
            GI+N +  +I+ G+AEG KV+      A+ G
Sbjct: 351 TGINNNVKVQILDGLAEGDKVVIGDATPAVAG 382