Pairwise Alignments

Query, 409 a.a., periplasmic component of efflux system (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 371 a.a., macrolide transporter subunit MacA from Klebsiella michiganensis M5al

 Score =  122 bits (306), Expect = 2e-32
 Identities = 109/391 (27%), Positives = 176/391 (45%), Gaps = 44/391 (11%)

Query: 2   KTKKI--ILIAVAVAVVVGGGIWFFTGSPAKHKVMYASATVSKGDISNSVTATGTIEPVI 59
           K +K+  +L  V +A+ V G  W    +P      Y +  V KGD+  SV ATG ++ + 
Sbjct: 6   KRRKVWWLLAIVVLALAVWG--WRILNAPLPQ---YQTLVVRKGDLQQSVLATGKLDALK 60

Query: 60  EVEVGTQVSGIIDKIYVDYNSVVTKGQLIAEMDRVTLQSELASQQAT-------YDGAKA 112
           +V+VG QVSG +  + V+    V K QL+  +D    ++++   +AT        + A+A
Sbjct: 61  KVDVGAQVSGQLKTLRVEIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQLNQARA 120

Query: 113 EFEYQKKNYERSKGLHDKSLISDTDYEQALYNYQKAKSAFDS-------SKASLAKAERN 165
           E +       R + L  + L+S  D + A  +    ++   +       ++A+L  A+ N
Sbjct: 121 ERKLSATTLARQQQLAQRQLVSRQDLDTAATDLAVKEAQIGTIEAQVKRNQATLDTAKTN 180

Query: 166 LSYATITSPIDGVVISRDVEAGQTVASGFETPTLFTIAADLTQMQVVADVDEADIGGIEE 225
           L Y  I +P+ G V       GQTV +  + P + T+ ADL+ M V A V EAD+  ++ 
Sbjct: 181 LDYTKILAPMSGEVTQITTLQGQTVIAAQQAPNILTL-ADLSTMLVKAQVSEADVIHLKP 239

Query: 226 GQRASFTVDAYPNDVFDGVVTQIRLGDASSSSSASSSTSTVVTYEVVISAPNPDLKLKPR 285
           GQ+A FTV   P   ++G +  I               +  + Y      PNP   L+  
Sbjct: 240 GQKAWFTVLGDPLTRYEGTLKDI--------LPTPEKVNDAIFYYARFEVPNPQGILRLE 291

Query: 286 LTANVTIFILDKKDVLSVPNRALRFTPEAPLIGKNDIVKDCEGEHKVWTREGTTFTAHPV 345
           +TA V I + + K+V+++P  AL        IG N         H    R G       +
Sbjct: 292 MTAQVHIQLSEVKNVITLPLSAL-----GDAIGDNRY-------HVRLLRTGEV-KEREI 338

Query: 346 EIGISNGISTEIISGVAEGTKVIT-EATIGA 375
            IG  N     ++ G+ EG +VI  E   GA
Sbjct: 339 VIGARNDTDVAVVKGLEEGDEVIIGEGAAGA 369