Pairwise Alignments

Query, 380 a.a., cytochrome D ubiquinol oxidase subunit II (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 379 a.a., cytochrome BD oxidase subunit II from Herbaspirillum seropedicae SmR1

 Score =  122 bits (307), Expect = 1e-32
 Identities = 103/394 (26%), Positives = 189/394 (47%), Gaps = 37/394 (9%)

Query: 2   YIFLQQYWWLVVSLLGAILVFLL---FVQGGNSLLFCLGKTEEHRKMMVNSTGRKWEFTF 58
           Y  L+  WW  V +L  I+ F L   F  G   +L   GK +  R++++N+ G  WE   
Sbjct: 5   YETLKLIWWAFVGVL--IIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEGNQ 62

Query: 59  TTLVTFGGAFFASFPLFYSTSFGGAYWLWMIILFSFVLQAVSYEFQSKAGNLLGKKTYQT 118
           T  +T GGA FA++PL Y+T+F G Y   M++LFS   + V ++++SK  +   +  +  
Sbjct: 63  TWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWDW 122

Query: 119 FLVINGVVGPLLLGGAVATFFTGSDFYINKANMTDTIMPVISHWGNGWHGLDALTNIWNV 178
            L I G V PL+ G A      G  F+ +     DT+   + + G+ +    AL N + +
Sbjct: 123 GLFIGGFVPPLICGVAFGNLLLGVPFHYD-----DTMR--VEYTGSFF----ALLNPFGL 171

Query: 179 ILGLAVFFLARVLGSLY-FINSIADKELTDKCRRAVLNNTIFFLVFFLV----------F 227
           + GL    +  + G+ + F+ +  +  + ++ R+ ++   +  ++ F+           +
Sbjct: 172 LAGLLSVAMLLMHGAAFAFVKT--EAAVAERSRKTIIGAALVTVLLFIAGGFWVAQMPGY 229

Query: 228 VIRTLVSDGFAVNPDTLEVYMQPYKYFINFIEMPVVLIIFLIGVVLVLFGIGKTVLKKTF 287
            I ++     A  P    V +    +F N+ + PV  +   +GV   +      +++   
Sbjct: 230 RIVSMPDANSAFTPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSA- 288

Query: 288 DKGIWFAGIGTVLTVLALLLVAGYNNTAY-YPSYTDLQSSLTLANSCSSEFTLKTMAY-V 345
                 A I + L+V  ++L AG +   +  PS  D +SSLTL +S SS  TL  M + V
Sbjct: 289 ----RLAFIASALSVTGIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMV 344

Query: 346 SILVPFVIAYIFYAWRSIDRHKITEKEMDEGGHS 379
            I +P +I Y  + +R + + K+T +++ E  H+
Sbjct: 345 LIFLPLIIVYTGWVYRVV-KGKVTARDIHENEHT 377