Pairwise Alignments

Query, 599 a.a., DNA primase/helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 454 a.a., primary replicative DNA helicase from Synechococcus elongatus PCC 7942

 Score = 46.2 bits (108), Expect = 3e-09
 Identities = 71/335 (21%), Positives = 138/335 (41%), Gaps = 37/335 (11%)

Query: 269 ANEHLVKYGIDS---LRIAIEQAE--------EIPLEGIFTAADLHEDLRALFDN-GFGP 316
           A   +++ G D+   L   ++QAE        E P  G+  AA++     A  ++   G 
Sbjct: 127 AGNSVIQLGYDTTKPLEAVLDQAEQKVFGITQERPTMGLLPAAEILTSTFAEIESRSMGT 186

Query: 317 ---GAETGWEEMDKICT-YERRRLVIVTGIPGAGKSEWLDELVLRLCMRHQWKIAFFSPE 372
              G    + ++D +   ++R  L+IV G P  GK+  +  +   + + H+  +  FS E
Sbjct: 187 ALSGISCNYYDLDAMTQGFQRSDLIIVAGRPAMGKTSIVLNIARNITVAHKLPVCVFSLE 246

Query: 373 --NNPIVYHLRKLIEKLTGRRFQNG-CGMTEGLLL-RSEEFLAENVCHIALKGSATPERV 428
                ++Y L  +   +   R ++G  G  E  +L +    L++    I      T   +
Sbjct: 247 MSKEQLIYRLLSMEIGIESSRLRSGRIGDHEWEMLGKGIMQLSQLPVFIDDTPGLTVSEM 306

Query: 429 LAKARELVLRRGCR--IFVFDPVNRFEHTPAPGQSETQYLSNFLNLFTEFATQYNCLVIL 486
            +KAR L+  +G +  + + D +   E + +   +  Q +S         A + N  VI 
Sbjct: 307 RSKARRLMSEQGGQLGLILIDYLQLMEGSSS--DNRVQEISKITRSLKGLARELNVPVIA 364

Query: 487 VAHPRKMNRNPVTNHTPRPDMYDVNGSADFFNKADYGLVVERDK-------EVGVTRVYV 539
           ++   +++R   +    RP M D+  S      AD  +++ RD+       + G+T + V
Sbjct: 365 LS---QLSRGVESRTNKRPMMSDLRESGSIEQDADLVMMIYRDEYYNPDTPDRGITEIIV 421

Query: 540 EKVKFKHLGTGGVATFVYDPVSGRYLPCEESQDPS 574
            K      G  G    +++P   R+     S  P+
Sbjct: 422 AK---HRNGPVGTVKLLFEPQFTRFRNLAGSHAPT 453