Pairwise Alignments

Query, 1057 a.a., ATP-dependent helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1230 a.a., DNA helicase/exodeoxyribonuclease V, beta subunit from Pseudomonas syringae pv. syringae B728a

 Score = 59.7 bits (143), Expect = 1e-12
 Identities = 122/487 (25%), Positives = 193/487 (39%), Gaps = 81/487 (16%)

Query: 380 EKIGTNIRN----VMIDEFQDTSRMQWGNF-KLLLLEGLSQGADSLIVGDVKQSIYRWRN 434
           E++ T IR      +IDEFQDT  +Q+  F  +  LE   +     ++GD KQ+IY +R 
Sbjct: 375 ERLATLIREQFPVALIDEFQDTDPVQYRIFDSIYRLEANDEQTGLFLIGDPKQAIYAFRG 434

Query: 435 GDWGILNGLNDRIEHFPIKVKTLATNRRSETNVIRFNNQIFTAAVNYLNEVYKKQLGKDC 494
            D  I   L  R +    +  TL TN RS   ++   N +FT A     +     L +D 
Sbjct: 435 AD--IYTYLRAR-QATDGRWHTLDTNYRSSHAMVESVNHVFTRA-EQREQGRGAFLFRDE 490

Query: 495 DDLQKAYAD-VVQESPRSVQKGYVKATFL--------EPDEAHDYTDQTLISLGEEVEHL 545
              Q  ++D + Q    ++       T L        +P     Y  Q   S   E+  L
Sbjct: 491 HGNQVPFSDALAQGRKETLHVDGAPLTALTVWHLQSDQPVSGVVYRQQLAASCASEIVRL 550

Query: 546 LSS----------------GVRLNDIAILVRKNKSIPRIADYF-----------DKELHY 578
           L++                G+R  DIAILVR  K    +               DK+  +
Sbjct: 551 LNAGQQGSAGFVTPDSTLRGLRPADIAILVRDGKEAQAVRQQLTARGVRSVYLSDKDSVF 610

Query: 579 KIVSDEAFRLDASLAICMMIDALRFLSDESNKIARAQLAIAYQNEVLQKNLDWNTLLLLP 638
              + EA  L + L  C   D+ R L      I    L +A    + Q  L W    ++ 
Sbjct: 611 --AAQEAHDLLSWLKACAEPDSERTLRAALACIT-LDLPLAELERLNQDELAWER-RVMQ 666

Query: 639 IENYLPPAFLEKQKELRLMPLYELLEELFSIFKMSHIEEQDAYLFAFFDAVTDYLQSNSS 698
              Y   A    Q    ++P+   L   F++ +          +      +++ LQ  ++
Sbjct: 667 FRGY--RAIWRSQ---GVLPMLRRLLHDFALPQTLMTRNDGERVLTNLLHLSELLQQAAA 721

Query: 699 ELDG---FIRYWDETLCSKTIPSGEVEGIR---------IFSIHKSKGLEFHTVLLPF-C 745
           ELDG    IR+  + L + +  +GE + +R         + +IHKSKGL++  V LPF C
Sbjct: 722 ELDGEQALIRHLGDHL-ALSGQAGEEQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFIC 780

Query: 746 DWKLENETNNQLVWCAPQEAPFNAMDILPINYSTQMAESIYGNDYLLERLQLWVDNLNLL 805
             K  + +   L +        + + + P     Q A+         ERL    ++L LL
Sbjct: 781 SSKPVDGSRLPLQFHDADGK--SQISLQPTEALIQQADD--------ERL---AEDLRLL 827

Query: 806 YVAFTRA 812
           YVA TR+
Sbjct: 828 YVALTRS 834



 Score = 44.3 bits (103), Expect = 6e-08
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 10/147 (6%)

Query: 8   KASAGSGKTFTLAVEYIKLLILNPRAY---------RQILAVTFTNKATAEMKERILSQL 58
           +ASAG+GKTFT++  Y++L++ +              QIL VTFT+ AT E+++RI ++L
Sbjct: 21  EASAGTGKTFTISALYLRLVLGHGTEQCGFGRELLPPQILVVTFTDAATKELRDRIRTRL 80

Query: 59  YGIQIGDKDS-EAYLNRIKEETKKTEQEIREAAGIALGYMLHDYSRFRVETIDSFFQSVM 117
                  +D   +    I E  ++ E  +  A    L           V TI S+ Q ++
Sbjct: 81  AEAARFFRDEIPSPDGLIAELREQFEASLWPACASRLDIAAQWMDEAAVSTIHSWCQRML 140

Query: 118 RNLARELELSPNLNIELNNAEVLSDAV 144
           R  A +        +E +++++L + +
Sbjct: 141 REHAFDSGSLFTQTLETDHSDLLGEVL 167