Pairwise Alignments

Query, 1057 a.a., ATP-dependent helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1223 a.a., exodeoxyribonuclease V, beta subunit (RefSeq) from Shewanella loihica PV-4

 Score = 66.6 bits (161), Expect = 1e-14
 Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 12/178 (6%)

Query: 1   MSELLVYKASAGSGKTFTLAVEYIKLLILN----PRAYRQILAVTFTNKATAEMKERILS 56
           +S   + +ASAG+GKT+T+A  Y++LL+ +    P +  QIL VTFTN AT E+++RI  
Sbjct: 13  LSGTRLIEASAGTGKTYTIAGLYVRLLLGDSQRAPLSCEQILVVTFTNAATQELRDRIRK 72

Query: 57  QL---YGIQIGDKDSEAYLNRIKEETKKTEQEIREAAGIALGYMLHDYSRFRVETIDSFF 113
           ++   Y   +G +  +  +N +  E    E E R  A   L   L       + TI  F 
Sbjct: 73  KIQLAYRAFLGMEVDDPLINTLYSE---AEPEARSQALKRLDLALKSLDEAAIFTIHGFC 129

Query: 114 QSVMRNLARELELSPNLNIELNNAEVLSDAVDSMIEKLGPTSPVLAWLLDYINERIAD 171
           Q ++ ++A E  L       L+++E L  AV     +     P+  +L   I+ + +D
Sbjct: 130 QRILSDMAFESSLLFESEFTLDDSEYLHHAVRDFWRE--ACYPLPGYLAQIISNKFSD 185



 Score = 58.5 bits (140), Expect = 3e-12
 Identities = 104/460 (22%), Positives = 182/460 (39%), Gaps = 67/460 (14%)

Query: 390 MIDEFQDTSRMQWGNFKLLLLEGLSQGADS----LIVGDVKQSIYRWRNGD-WGILNGLN 444
           +IDEFQDT  +Q+  F  +  +G     DS    L++GD KQ+IY +R  D    ++   
Sbjct: 382 LIDEFQDTDPLQYQIFSSIY-QGQQVSTDSDLGLLMIGDPKQAIYAFRGADIHTYIHARG 440

Query: 445 DRIEHFPIKVKTLATNRRSETNVIRFNNQIFTAA-------------VNYLNEVYKKQLG 491
               H+     +L TN RS   +I   NQ+F+ +             V    E  +K+L 
Sbjct: 441 QTENHY-----SLDTNYRSSQAMIEAVNQLFSRSDDPFISQAIPFELVKASPEAAEKRLV 495

Query: 492 KDCDDLQKAYADVVQESPRSVQKGYVKATFLEPDEAHDYTDQTLISLGEEVEHL-LSSGV 550
           +           ++ E P +        + L  D A++     L++  +  E L     +
Sbjct: 496 EKVPQTSALRLKLLGEDPNAGLNKASARSQLAEDAANEIA--RLLNEAQRGECLKQDKPL 553

Query: 551 RLNDIAILVRKNKSIPRIADYFDKELHYK------IVSDEAFRLDASLAICMMIDALRFL 604
           +  DIA+LVR        A Y    L  +      +  D  F    +  + +++ A+   
Sbjct: 554 KAKDIAVLVRDRNE----AAYIKTALSSRGIGAVFLSRDSVFDTLVAKELALVLLAIANP 609

Query: 605 SDE-SNKIARAQLAIAYQNEVLQK-NLDWNT-LLLLPIENYLPPAFLEKQKELRLMPLYE 661
            DE + + A A   + Y  + +   NLD +     L   + L   +L++     +MP   
Sbjct: 610 KDERALRSAMATALLGYDAQAIHGFNLDEDVRQQQLEAFDNLHQTWLKR----GIMPCMM 665

Query: 662 LLEELFSIFKMSHIEEQDAYLFAFFDAVTDYLQSNSSELDG---FIRYWDETLCSKTIP- 717
            L     + +     ++       F  + + LQ  + ELDG    + ++ +TL   +   
Sbjct: 666 ALAADTRLIERLLTADEGQRRLTDFRHLGELLQQKAMELDGISALLNWYQQTLIEVSSTE 725

Query: 718 ------SGEVEGIRIFSIHKSKGLEFHTVLLPFCDWKLENETNNQLVWCAPQEAPFNAMD 771
                   E   ++I +IHKSKGLE+    LPF     ++      +    Q+A    +D
Sbjct: 726 EAQLRLESEQNLVQIVTIHKSKGLEYPICFLPFVSLARDSRRKPAPMLYHEQDALVWDID 785

Query: 772 ILPINYSTQMAESIYGNDYLLERLQLWVDNLNLLYVAFTR 811
                ++   AE++              ++L LLYVA TR
Sbjct: 786 QSEEGWAKYKAENL-------------AEDLRLLYVALTR 812