Pairwise Alignments

Query, 514 a.a., hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 533 a.a., SusD/RagB family nutrient-binding outer membrane lipoprotein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  117 bits (293), Expect = 1e-30
 Identities = 137/546 (25%), Positives = 233/546 (42%), Gaps = 88/546 (16%)

Query: 10  VGTALVLVAGSCT-GNFEEYNTNQFQIHEA--DPSTLMKSMIETIVNIQQNDSQMMDQMV 66
           +G   +++ GSC+    +E NT+  ++ E   DP++L+        N+          M+
Sbjct: 9   IGVFFLVLMGSCSKAKLDEINTDPTKLTENNYDPNSLLAQAQLKYANLGYYQLLYQSTMM 68

Query: 67  GQLGG-YLTCANVWSGTNFGTFN--QSDAWNAGPWNTNFEKIYGNFFQIQEATNESGHYY 123
             L   Y    N     N G+F   Q   ++ G  + ++ +      ++++      +  
Sbjct: 69  QLLSSTYYYYNNGDKYINVGSFTDYQGRIFDEGYTDASYIREMQRLARLKDPVAYQ-NLI 127

Query: 124 AFARMIRAITMLRVADCYGPMPYSQVKK---GNFYVAYDTEEQVYKNIMEDFASAANVLY 180
           A   ++  + + R+ D YG +PY+Q  K   G  Y  YD +E +Y  ++ D  +A   L 
Sbjct: 128 AIGDIMFVLILQRITDTYGDVPYTQAVKAMQGIKYPVYDRQEDIYNQMLNDLEAATAQL- 186

Query: 181 NYYKDTNGNAPLASNDPVFSGNYANWARLANSMRLRVAIRISTAYPEMAKENAEAAASHE 240
               DT    P A  D  + G+ + W +   S+ LR+A+R++ A PE AK  AE AA   
Sbjct: 187 ----DTEKPGPTA--DLFYKGDISKWKKFGYSLMLRIAMRLTKADPEKAKLWAEKAADKT 240

Query: 241 AGLIEANNDNAMM--DCGS--QTNPYQLAAVSWGD---LRVNANIVDYMNGYGDPRMSKY 293
              I   NDNA++  D  S    N   LA  ++ D   +R +  ++D +    DPR++  
Sbjct: 241 FTSI---NDNAILLTDASSFNSQNGTSLALRTFSDYLEVRWSKTLIDQLKNTNDPRLAVV 297

Query: 294 FN----------HSTFTGHTQE--YVGMRSGED--------------------GFAKSDV 321
                           +G+T     VGM +G D                    G   + +
Sbjct: 298 GEVPKDGLTRNADQNLSGNTDAAVQVGMPNGYDLQGGTTDISRSPNYPGGTGTGSDFAPL 357

Query: 322 AGYSIPAITGTSKL----LVFCAAETAFLRAEGKLKNWSVGNKSAKEYYEEGIKLSMEQY 377
             YS P  T   KL     +   AET FL AE K++ W++ N +AK +Y  G+  +++  
Sbjct: 358 GKYSRPRTTIYLKLGGPIFILSYAETEFLLAEAKVRGWNI-NGTAKLHYTNGLTGAIQSL 416

Query: 378 GTTMPDNYLTNTEKPTVSHNNDPRGHAYTISNTVAVAWNDNNEEENLQRIITQKWIA--- 434
               P     +  K T   N +P               ++++ +  L  I TQ W+A   
Sbjct: 417 AQLDP-LAAVDANKITTFVNQNP--------------LDESSTQSALNAINTQYWVATGT 461

Query: 435 NYPLGLEAWAEYRRTGYPELYPCIDNLSPSG-VDSKRGMRRLRFPYTEVQNNHSNYQQGV 493
           N+   +EAW  ++R+ YP+L P    +S  G V +    RR+ +  TEV NN  NY+  +
Sbjct: 462 NFNF-IEAWLNWKRSDYPKLTP----ISYKGNVTNGTIPRRMIYLSTEVLNNPQNYKDAI 516

Query: 494 SYLKNG 499
           + +  G
Sbjct: 517 ARIAGG 522