Pairwise Alignments

Query, 560 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 551 a.a., polysaccharide lyase from Pedobacter sp. GW460-11-11-14-LB5

 Score =  624 bits (1610), Expect = 0.0
 Identities = 312/522 (59%), Positives = 381/522 (72%), Gaps = 10/522 (1%)

Query: 22  AQYPVIPDSVKERGAKQEAEFEQKSNAAWEKALPTVLEEARLGRPYKPWASKPEDLIKSN 81
           AQYP IP  +K+       E   +S+ AWEKA P + +EA  G+PY PWA +P DL +S 
Sbjct: 23  AQYPNIPADIKKSSDSMMKEAYHQSDIAWEKAKPIMAKEAAEGKPYIPWAGRPTDLPQSK 82

Query: 82  IPAFPGAEGGGMYTPGGRGGKVIVVTSLEDSGPGTFREACETGGARVIVFNVSGIIRLKS 141
           + AFPGAEGGG Y+ GG GG+VIVV +L D GPG+ R+ACE GGAR++VFNV+GIIRLK+
Sbjct: 83  LLAFPGAEGGGAYSFGGHGGRVIVVKNLNDRGPGSLRDACEQGGARIVVFNVAGIIRLKT 142

Query: 142 PISVRAPYVTIAGQTAPGDGICVTGHSFLIDTHDVVIRHMRFRRGAQDVAFRDDAVGGNA 201
           P+ +RAPY+TIAGQTAPGDG+CV G S  ++THDV++R MRFRRG   V  RDDA+GGN 
Sbjct: 143 PLIIRAPYITIAGQTAPGDGVCVAGESVWLNTHDVIVRFMRFRRGETFVGRRDDAIGGNP 202

Query: 202 VGNIIIDHCSASWGLDENMSIYRHVYNRDETGH-GLKLPTVNITIQNSMFSEALDTYNHA 260
           VGNI+IDH SASWGLDENMS+YRH+YN D TG    KL TVNITIQNS+FSEALD +NHA
Sbjct: 203 VGNIMIDHVSASWGLDENMSMYRHMYN-DSTGKTEEKLGTVNITIQNSIFSEALDYWNHA 261

Query: 261 FGATIGGHNSMFCRNLFASNISRNSSVGMDGDFNFVNNVVFNWWNRSVDGGDNKSFYNII 320
           FG+T+GG N  F RNL+A N +RN S+G +G FNF NNVVFNW NRS DGGD  + YNII
Sbjct: 262 FGSTLGGENCAFVRNLWADNGARNPSIGWNGIFNFANNVVFNWNNRSTDGGDYTAQYNII 321

Query: 321 NNYFKPGPITPLDKPISYRILKPEAGRDKSKPMSFGKAYVNGNIVHGNAKVTKDNWDGGV 380
           NNY+KPGP+T L  PISYRILKPE+GR K   + FG+AYV GNI+ GN +VTK+NWDGGV
Sbjct: 322 NNYYKPGPVTELKDPISYRILKPESGRSKLPYVVFGRAYVAGNIIDGNERVTKNNWDGGV 381

Query: 381 Q-------LASEVDEGKFLPQIRVDEAFKMSPVTIMDTKKAYNFVLDNVGATLPKRDAVD 433
           Q       L S    GK+ P ++  + F M  ++I+ T +A  +VL N GATLPKRD VD
Sbjct: 382 QMEDKKGNLMSLETAGKYFPAMKAKDPFPMPKISIIPTLQAKEYVLANAGATLPKRDPVD 441

Query: 434 ARVIKTVQTGKAIYAKDAPEFVSPYVKRRLPADSYKQGIITDIRQVGGLPEYKGEAYLDS 493
            RV+K V TGK     +A      +  RRLP DSYKQGIIT++ QVGG PEYKG  Y DS
Sbjct: 442 TRVVKQVATGKIEVYPNAKPSAFQFEHRRLPGDSYKQGIITEVSQVGGYPEYKGTPYKDS 501

Query: 494 DGDGMPDAWEIANGLNPNDPTDAKEDCNGDGYTNIEKYINGL 535
           D DGMPDA+E+ NGLNP D +DA +     GY+NIE Y+N +
Sbjct: 502 DDDGMPDAYELKNGLNPKDASDAAK-ITKSGYSNIEVYLNSV 542