Pairwise Alignments

Query, 163 a.a., ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 169 a.a., RNA polymerase subunit sigma-24 from Azospirillum brasilense Sp245

 Score = 52.0 bits (123), Expect = 5e-12
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 5/160 (3%)

Query: 1   MAAFSQLYDLHINILFNYGLKLTIDKELLKDCIHDIFVKLYTKKDELGTIDNLKSYLFIS 60
           ++ F    ++HI  L  Y   L  ++   +D + +   +   + D      NL+++LF  
Sbjct: 1   LSTFGVELEVHIASLRRYARALLRNRSDAEDLVQEALTRAVARADTFKAGTNLRAWLFTI 60

Query: 61  LKNKLCDELRKRMYMSDTAIEDVNAVAPTDVEDDYMEEEQRKNEFSLVKRLLDQLSPRQR 120
           L N   +++R +    D    DV++V    V     EE     E   + R LD L   QR
Sbjct: 61  LHNVHVNQVRSKASRPDEV--DVDSVESKLVTPARQEERVELRE---MMRALDDLPEEQR 115

Query: 121 EALTLYYIEEKKYEDICEIMNMNYQSVRNLMHRGLTKLRS 160
           + L L  +E  KYE++ E + +   +V + + R    +R+
Sbjct: 116 KVLLLVALEGLKYEEVAETLGVPIGTVMSRLSRAREAVRA 155