Pairwise Alignments

Query, 163 a.a., ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 196 a.a., RNA polymerase sigma factor from Synechococcus elongatus PCC 7942

 Score = 60.5 bits (145), Expect = 2e-14
 Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 4/164 (2%)

Query: 1   MAAFSQLYDLHINILFNYGLKLTIDKELLKDCIHDIFVKLYTKKDEL--GTIDNLKSYLF 58
           +AA ++LYD H  +++   +++  + +  +D   DIF++L  ++         +L++YL 
Sbjct: 28  VAALARLYDRHAGLVYGIAMQVLGNPQEAEDLTQDIFIRLVDRQHSHYDSKRGSLRTYLA 87

Query: 59  ISLKNKLCDELRKRMYMSDTAIEDV-NAVAPTDVEDDYMEEEQRKNEFSLVKRLLDQLSP 117
           +  +++  D LR R   + +AIE V N V     ED  +         + V++ L QL  
Sbjct: 88  VLTRSRAIDRLRSRRTQA-SAIERVQNQVKQEATEDPPIASLGAAETSAEVQKALAQLPE 146

Query: 118 RQREALTLYYIEEKKYEDICEIMNMNYQSVRNLMHRGLTKLRSL 161
            Q++ L L Y E     DI E ++    +++    RGL KLR +
Sbjct: 147 SQQQVLRLAYYEGLSQSDIAERLSEPLGTIKARARRGLLKLRQM 190