Pairwise Alignments

Query, 163 a.a., ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 178 a.a., RNA polymerase sigma factor SigE from Marinobacter adhaerens HP15

 Score = 65.5 bits (158), Expect = 5e-16
 Identities = 39/159 (24%), Positives = 83/159 (52%), Gaps = 12/159 (7%)

Query: 11  HINILFNYGLKLTIDKELLKDCIHDIFVKLYTKKDELGTIDNLKSYLFISLKNKLCDELR 70
           H++ ++ +  +L   ++  +D + D+ VKL+ K DEL ++D L+ +L   L  +  D++R
Sbjct: 4   HLDAMYRFAYRLAGQQQDAEDLVQDVVVKLFPKLDELESVDQLRPWLNRVLYRQFIDQVR 63

Query: 71  KRMYMSDTAIED----------VNAVAPTDVEDDYMEEEQRKNEFSLVKRLLDQLSPRQR 120
           ++   SD  + +          ++++    V  D   E+ R      + R++  L+P QR
Sbjct: 64  RKNRQSDRPLTELVGSESQADWLDSLESDSVGPDLQLEQSRLG--PALDRVMMTLTPDQR 121

Query: 121 EALTLYYIEEKKYEDICEIMNMNYQSVRNLMHRGLTKLR 159
             L L+ ++  + EDI E++++   +V++ +HR    LR
Sbjct: 122 TLLLLHDVDGWRQEDIAEVLDIPLGTVKSRLHRCRAALR 160