Pairwise Alignments

Query, 394 a.a., conserved hypothetical protein, putative transmembrane protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 375 a.a., ABC transporter, permease protein, putative (RefSeq) from Shewanella amazonensis SB2B

 Score = 68.6 bits (166), Expect = 3e-16
 Identities = 78/376 (20%), Positives = 155/376 (41%), Gaps = 27/376 (7%)

Query: 12  SVLLREWRRMTSRRLYLCVCIILPLFTLFFMATIFGNGQMENIPIGIVDQDNTASSRAIT 71
           ++L +E ++++  R+   + +++PL  L        N    ++P G+VD    +  RA+ 
Sbjct: 7   AILTKELKQLSRDRMTFGMIVMIPLVQLMLFGYAI-NTDARHLPAGLVDMSGNSQGRALV 65

Query: 72  RNISAVPTFKVTRHFVNEEAARKAVQKKEIYGYLSIPPKFEQDAIS------GKNATLSY 125
           + +SA         + +   A +A+    +   L IP  F    IS      G+ A  S 
Sbjct: 66  QAVSATQVVDFIESYQSIAQAEEAITAGHVKAALVIPADFGSRLISHPQAQTGQGAYFSR 125

Query: 126 YYHYALLSVGGELMAAFETSLAPVSLSPIVMQAVALGVEQDKITTFLLPVQASNHPIYNP 185
                L+     ++A+   SL  + LS +      LG+   + T  +  V       +NP
Sbjct: 126 PVAQWLVDGSDTVVASTIKSLRTMPLSEV------LGLPVPESTATMEVVM-----YFNP 174

Query: 186 SLDYSVYLSQPFFFVLFQVLILLITVYAVGIEIKFRTADEWLFVAKGNMVTAVLGKLLPY 245
                V +      V+  + ++L T  A+ +  + +   E+L       +  +LGK+LPY
Sbjct: 175 EQRTVVNIVPGLLGVILTMTMVLFTSAAI-VREREQGNMEFLITTPVKPLELMLGKILPY 233

Query: 246 TIIFILIGWLANYVMFG----ILHIPFQGSWLLMNMLTALFVVATQALGLFLFSLFPAIS 301
               +L+G++   ++ G    +  +P +G    + +   LF++A+  LGL + ++     
Sbjct: 234 ----VLVGFVQVAIILGAGKLLFALPIRGGLESLALAAMLFILASLTLGLVISTIARTQL 289

Query: 302 LIISIVSMVGSLGATLSGVTFPVPNMYPLVRDASYLFPVRHFTEMMQNMLYGGSGFIHLW 361
             + +   +      LSG  FP   M    +  +   P  HF  M + ++   +    L 
Sbjct: 290 QAMQMTVFILLPSILLSGFMFPYEAMPVPAQWIAEALPATHFMRMSRAIILRDAEVTQLG 349

Query: 362 PSAVILCIFPLLALVL 377
             A+ L  F  L L++
Sbjct: 350 FDALWLLGFCALGLLV 365