Pairwise Alignments

Query, 394 a.a., conserved hypothetical protein, putative transmembrane protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 431 a.a., ABC-2 type transporter (RefSeq) from Shewanella sp. ANA-3

 Score =  124 bits (312), Expect = 4e-33
 Identities = 98/393 (24%), Positives = 186/393 (47%), Gaps = 16/393 (4%)

Query: 12  SVLLREWRRMTSRRLYLCVCIILPLFTLFFMATIFGNGQMENIPIGIVDQDNTASSRAIT 71
           +++ RE R +      L +   +PL  +  +  +F  G    +P+ IVDQD++  SR +T
Sbjct: 33  ALVRRELRALWRDPWQLALISYIPLLGILCLWWLFSAGLPRQLPVAIVDQDHSQLSRMLT 92

Query: 72  RNISAVPTFKVTRHFVNEEAARKAVQKKEIYGYLSIPPKFEQDAISGKNATLSYYYHYAL 131
           R + A P  +  R F +  +A  A+Q+ ++Y  +  P   ++D ++G   T+   Y+   
Sbjct: 93  RQLKANPVTE-PRSFTDLPSAVAAMQQAQVYAVVVFPHDMKKDLLTGHKPTIDVRYNSQF 151

Query: 132 LSVGGELMAAFETSLAPVSLSPIVMQAVALGVEQDKITTFLLPVQASNHPIYNPSLDYSV 191
           L VG  L +  + SL    L    ++ +  G  + ++   L PV++    ++N + +Y  
Sbjct: 152 LLVGKLLSSQIQLSLGDGLLQVAGLKQLMTGTPKSQVAVNLSPVKSQTTALFNRNNNYIG 211

Query: 192 YLSQPFFFVLFQVLILLITVYAVGIEIKFRTADEWLFVAKGNMVT-----AVLGKLLPYT 246
           +L  P    L+Q+L +L+   ++  E+    A     ++  N +T      VL K+L +T
Sbjct: 212 FLVPPVLVALWQLLSMLVMANSLNRELHLNAAQSEEGIS--NRLTEHFWPKVLAKILLFT 269

Query: 247 IIFILIGWLANYVMFGILHIPFQGSWLLMNMLTALFVVATQALGLFLFSLFPAISLIISI 306
            I +L G      ++  L +PF GS  L+ +   + ++A  +L LF+F L    + +IS 
Sbjct: 270 PILMLQGGFILAWLYLYLALPFAGSLALLLVAQLIMLLAVWSLVLFIFVLMRDSARVISF 329

Query: 307 VSMVGSLGATLSGVTFPVPNMYPLVRDASYLFPVRHFTEMMQNMLYGGSGFIHL------ 360
            + + +      G+TFP   M  L +    + P  H+ E   +++  G+ +  L      
Sbjct: 330 CTALFAPAFAFMGITFPTHEMPQLAQWWRLIMPSSHYIESHVSVVSYGATWSTLAQQLSS 389

Query: 361 -WPSAVILCIFPLLALVLLP-HLKRAIESHKYE 391
            W    +L +  LLA+ LLP  +K   E+ +Y+
Sbjct: 390 YWGFIGLLPLIYLLAIKLLPMTVKAQAEAAEYD 422