Pairwise Alignments

Query, 416 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 356 a.a., secretion protein HlyD (RefSeq) from Shewanella amazonensis SB2B

 Score = 57.8 bits (138), Expect = 5e-13
 Identities = 70/390 (17%), Positives = 150/390 (38%), Gaps = 54/390 (13%)

Query: 29  IYVIVLSLGPRKLRIDAENIQIAEVKEDNFMEYVDVEGLIQPILTIKINTREAGSVESIV 88
           +  + L +G + L  D  ++ +A V++      + V G +      ++ T  AG +E  V
Sbjct: 8   LLALALIMGGQVLAADERSVGVATVEQRPLSPKLMVVGTVHSRSLAQLTTGVAGKLEW-V 66

Query: 89  GEEGSLLYQGDTIIVLSNPDLLRSIEDQRDEWEKQMITYQEQEIEMEQKSLNLKQQALTN 148
            E G+ +  G+ +  L    L   + +Q+            +EI + +   NL +     
Sbjct: 67  QEAGTRVSAGEVVARLDATPLTLQLAEQQ-------ALVNREEIALARLERNLTR----- 114

Query: 149 NYELERLKKSIALDREEFQMGVKSKAQLQVAEDEYNYKLKNAALQQESLRHDSAVTMIRK 208
              LERL  S ++ R E                     + +   +++  +    +  +R 
Sbjct: 115 ---LERLAASQSISRTE---------------------IDDTRSERDLAKSSLELARVRL 150

Query: 209 ELIRNDRERERKKYERTHERLNNLVVTAPIKGQLSFVRVTPGQQVSSGESIAEIKVLDQY 268
           ++IR++  R + K              AP  G +       G+ V   E +  I   D  
Sbjct: 151 DIIRDNLARTQLK--------------APFGGIVISRSHQAGEDVGPAEPVLTITDPDHL 196

Query: 269 KIHTSLSEYYIDRITTGLPATVNYQGKKYPLKITKVVP--EVKDRMFDVDLVFTGDMPDN 326
           +I       +  R+  G    V +   ++  +I  ++P  +V+ + F+  L     M   
Sbjct: 197 EIRLHAPLKHSRRVNIGDELKVYHSNGEFSARIRTLIPVSDVRSQTFEARLDLPQAMARE 256

Query: 327 VRVGKSFRVQIELGQPERALIIPRGNFYQSTGGQWIYKVNASKTKAIRVPLSIGRQNPQQ 386
           + +G+   + + +       ++PR      + G  +++V   +T A R+P+++G      
Sbjct: 257 INIGELVSMALPIAPATLTTLVPRDALVLRSSGASVFRVTPEQT-AERIPVTLGDGEGPW 315

Query: 387 YEITEGLQTGDWVITTGYDTFGDAEELILK 416
             +   L  GD ++  G +T  D  +L ++
Sbjct: 316 IAVRGELNAGDTLVIRGAETLTDGMKLTVQ 345