Pairwise Alignments

Query, 416 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 417 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score = 51.6 bits (122), Expect = 4e-11
 Identities = 47/238 (19%), Positives = 102/238 (42%), Gaps = 9/238 (3%)

Query: 171 KSKAQLQVAEDEYNYKLKNAALQQESLR-HDSAVTMIRKELIRNDRERERKKYERTHERL 229
           K+KA L  A+   N + +     +  ++ H    T I  +L   D    R   +     L
Sbjct: 126 KAKANLAEAKAYLNDERRKLGEYKRLIKQHAITQTEIDAQLASVDIAEAR--LQAAQADL 183

Query: 230 NNLVVTAPIKGQLSFVRVTPGQQVSSGESIAEIKVLDQYKIHTSLSEYYIDRITTGLPAT 289
           +   + AP  G +  V  + G+ VS G  +  +  L   ++   + E Y+ +I  G+P  
Sbjct: 184 DYHTLKAPFDGVIGLVDFSLGKLVSVGSELVSLDDLSSMRLDLQIPERYLSQIYLGMPVV 243

Query: 290 VN---YQGKKYPLKITKVVPEVKDRMFDVDLVFTGDMPD-NVRVGKSFRVQIELGQPERA 345
            +   + G+++  ++  + P +     ++ +    D P   +R G     +++     +A
Sbjct: 244 ASSSAWPGEQFHGQVVAMAPRINSETLNLKVRVNFDNPSLQLRPGMLISARLDFAPVTQA 303

Query: 346 LIIPRGNFYQSTGGQWIYKVNASKTKAIRVPLSIGRQNPQQYEITEGLQTGDWVITTG 403
           ++  +   Y  T  +++Y +++    A R  +++G +   Q  I +GL  GD ++  G
Sbjct: 304 VVPVQALEYSGTK-RFVYVIDSDNI-ARRTQVTLGARIDDQVLIDDGLSLGDRIVVKG 359