Pairwise Alignments

Query, 416 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 420 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score = 87.4 bits (215), Expect = 7e-22
 Identities = 82/408 (20%), Positives = 173/408 (42%), Gaps = 10/408 (2%)

Query: 12  IRYRYYLIGGLLFAAFLIYVIVLSLGPRKLRIDAENIQIAEVKEDNFMEYVDVEGLIQPI 71
           I++   +  G+L  + L++  V      +  ID   ++ A ++    +  +   G I   
Sbjct: 20  IKWPVTIGAGVLLVSGLVWASVSGSSVSE-SIDRSELRFATLERGTLVRDIASTGKIVAA 78

Query: 72  LTIKINTREAGSVESIVGEEGSLLYQGDTIIVLSNPDLLRSIEDQRDEWEKQMITYQEQE 131
               +   E G+V +++   G  + QG  +  + +  L  +++ Q+   E    + +   
Sbjct: 79  NAPILYAPEKGTV-TLIANPGDKVEQGQVVATIESHSLTNNLKQQQALLEGMQSSLERAR 137

Query: 132 IEMEQKSLNLKQQALTNNYELERLKKSIALDREEFQMGVKSKAQLQVAEDE-YNYKLKNA 190
           ++  +  L   Q       +LE   +      +  +  + SK   + ++DE +  KL  A
Sbjct: 138 LDARRDQLKAIQTLDMAKVDLEAADRESRRGDQLIESSLISKIDYEKSKDELHKAKLLYA 197

Query: 191 ALQQES-LRHDSAVTMIRKELIRNDRER-ERKKYERTHERLNNLVVTAPIKGQLSFVRVT 248
             QQE+ L  D+    ++ +    DR+     + ER    LN   +TAP+ G +      
Sbjct: 198 HAQQEAELMKDTLSFELKNKASEVDRQALVVAELERQVAALN---ITAPVGGIIGNWLTE 254

Query: 249 PGQQVSSGESIAEIKVLDQYKIHTSLSEYYIDRITTGLPATVNYQGKKYPLKITKVVPEV 308
              ++   + I  +  L  ++   ++ E Y D +  G+   +N+ G+    K++ + PEV
Sbjct: 255 QKARIGQSQPILTVVDLSAFEAELAVPESYADELGIGMDVELNFGGQLVMGKLSAISPEV 314

Query: 309 KDRMFDVDLVFTGDMPDNVRVGKSFRVQIELGQPERALIIPRGNFYQSTGGQWIYKVNAS 368
           ++R     + F      ++R  +    ++ L      L++ RG F  S GG  +Y V   
Sbjct: 315 RNREVTTRVRFEQQAALHLRQNQRLSARVLLENRPDVLMVKRGPFVNSGGGTLVYAV--K 372

Query: 369 KTKAIRVPLSIGRQNPQQYEITEGLQTGDWVITTGYDTFGDAEELILK 416
              A R  + +G ++    E+  G + GD  I +  D F +AE+++++
Sbjct: 373 NDLAERTEIQLGARSMSHIEVVSGGEVGDQWIISSTDAFKNAEQVLIR 420