Pairwise Alignments

Query, 416 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 356 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score = 67.0 bits (162), Expect = 8e-16
 Identities = 74/361 (20%), Positives = 151/361 (41%), Gaps = 45/361 (12%)

Query: 56  DNFMEYVDVEG-LIQPILTIKINTREAGSVESIVGEEGSLLYQGDTIIVLSNPDLLRSIE 114
           +  ++ V VE   + P + +  +       E   G EG L +  +   ++   +++  IE
Sbjct: 26  ERLVQVVQVENRALSPKIMVIGSVHSRNYAELTAGIEGKLEWVIEAGTLVKAGEVVARIE 85

Query: 115 DQRDEWEKQMITYQEQEIEMEQKSLNLKQQALTNNYELERLKKSIALDREEFQMGVKSKA 174
             R E +K      +QE ++E +++ L +     N EL+RL+K +A           S+ 
Sbjct: 86  KTRLELQKA-----QQEAQIEYETVGLSRL----NRELKRLQKLMANKNA-------SET 129

Query: 175 QLQVAEDEYNYKLKNAALQQESLRHDSAVTMIRKELIRNDRERERKKYERTHERLNNLVV 234
           +L  A  + +    N  L Q           I+ E+I +D  R + K             
Sbjct: 130 ELDKARSDRDLAAANLKLAQ-----------IKLEMILDDIARTQVK------------- 165

Query: 235 TAPIKGQLSFVRVTPGQQVSSGESIAEIKVLDQYKIHTSLSEYYIDRITTGLPATVNYQG 294
            AP  G ++  +   G+ +S  ESI  I   D  +I       +  R+  G    V +  
Sbjct: 166 -APFAGIITARQRQAGEDISRAESIVAITDPDNLEIRLHAPLKHSRRVKVGDELRVYHGL 224

Query: 295 KKYPLKITKVVP--EVKDRMFDVDLVFTGDMPDNVRVGKSFRVQIELGQPERALIIPRGN 352
            ++  KI  ++P  +V+ + F+  +    +  D + VG+   + + +   +   ++PR  
Sbjct: 225 GEFSAKIRSLIPVSDVRSQTFEARIDLPLERQDMLNVGELVSLALPIAPKQLTTLVPRDA 284

Query: 353 FYQSTGGQWIYKVNASKTKAIRVPLSIGRQNPQQYEITEGLQTGDWVITTGYDTFGDAEE 412
               + G +++K++ S  KA++V + +G    +   +   L   D V+  G +T  D ++
Sbjct: 285 VVLRSAGAFVFKIDES-NKAVKVAVELGDGEGEWIAVKGELSDSDQVVIRGAETLQDGQQ 343

Query: 413 L 413
           +
Sbjct: 344 V 344