Pairwise Alignments

Query, 416 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 405 a.a., RND family efflux transporter, MFP subunit from Sphingomonas koreensis DSMZ 15582

 Score = 52.4 bits (124), Expect = 2e-11
 Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 6/178 (3%)

Query: 229 LNNLVVTAPIKGQLSFVRVTPGQQVSSGESIAEIKVLDQYKIHTSLSEYYIDRITTGLPA 288
           LN + VTAPI G+++   V  GQ V++   +  +  L +  +  SLS     R+  G P 
Sbjct: 214 LNRIGVTAPIAGRITARPVVLGQTVAADAELFRVSNLSRVAVTVSLSPADAARVAVGAPV 273

Query: 289 TVNYQGKKYPLKITKVVPEVKD--RMFDVDLVFTGDMPDNVRVGKSFRVQIEL-GQPERA 345
            ++  G++   +++ V P + +  R+  V +    +     RVG+     ++L GQ   A
Sbjct: 274 EISSGGRRSAAQVSFVSPVLDETTRLVTV-IALIDNSAGQWRVGEPVTAVVQLPGQGGGA 332

Query: 346 LIIPRGNFYQSTGGQWIYKVNASKTKAIRVPLSIGRQNPQQYEITEGLQTGDWVITTG 403
           + +P          Q ++   +S  +A  VP+++G  +     +T GL   + +  TG
Sbjct: 333 VSVPASALQTVENRQVVFVRTSSGFRA--VPVTVGAHSSGSVVVTSGLTGREEIAGTG 388