Pairwise Alignments

Query, 278 a.a., phosphomethylpyrimidine kinase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 581 a.a., phosphomethylpyrimidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  147 bits (370), Expect = 7e-40
 Identities = 105/308 (34%), Positives = 155/308 (50%), Gaps = 54/308 (17%)

Query: 5   PVILSIAGSDCSGGAGIQADIKTISALGGYAASAITAVTVQNTLGVRAVHAIPPEIVCGQ 64
           P++ +IAGSD  GGAGIQAD+ T++ L  +  S IT VT QN++ V  V  +   I+  Q
Sbjct: 6   PIVWTIAGSDSGGGAGIQADLATMADLDCHGCSVITCVTAQNSVAVNGVEPVSEAILLAQ 65

Query: 65  IEAVMEDLQPVAIKIGMVNDIQIVHVIADCIRKY---------SPEHIIYDPVMVSTSGR 115
           ++ ++ DL P AIKIG++ + + ++++AD +  +          P  II DPVMV++ G 
Sbjct: 66  LDTLLVDLPPRAIKIGLLANQRQINLVADWLATHMAPLKTDDGQPIPIILDPVMVASCGD 125

Query: 116 KLMTNEAIE-------------------EIKKE-----------LLPLVTLVTPNIDEAK 145
            L    A++                   E+K E              L+TLVTPN  E  
Sbjct: 126 ALTGESAVQASAQTKTKPKTKLKTKPKTELKTEPKHLAGLDFTPFAKLLTLVTPNASEFG 185

Query: 146 VLTGKSIQNTQDMLEAAKQLSDSYQIHILIKGGH----LEGDQMCDLLY-------SP-- 192
            L G    ++ +ML  A  LS     ++LI GG        D+  DL         SP  
Sbjct: 186 KLVGSEASSSDEMLAQASALSRRLVCNLLITGGDKGSLWYSDKAEDLFICNAVAHTSPLH 245

Query: 193 DHTYYIYEEKKIESKNLHGTGCTLSSAIASYLAKGYSMKESIRHAKEYITHAIIAGKDLN 252
            HT +    +++++ N HG+GCTLSSAIAS+LA+G  + ++I  AK Y+   I   K L 
Sbjct: 246 QHTSFRLSGERVDNPNHHGSGCTLSSAIASFLAQGLVLHDAILLAKTYVGQGIAPAKAL- 304

Query: 253 IGHGNGPL 260
            G G GPL
Sbjct: 305 -GAGAGPL 311