Pairwise Alignments

Query, 338 a.a., putative mRNA-binding protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 313 a.a., mRNA-binding protein from Synechococcus elongatus PCC 7942

 Score = 94.7 bits (234), Expect = 3e-24
 Identities = 96/334 (28%), Positives = 147/334 (44%), Gaps = 48/334 (14%)

Query: 1   MKALFIGGTGTISTDVVELAQQRGWEITLLNRGSKKLPEGVGSIIADIHDEEAVAKAIAD 60
           M+ L IGG+  I   +V      G  +T+ NRGS+    GV  ++ D  D  A+A+ +  
Sbjct: 1   MRILVIGGSRFIGVALVRQLLAAGHAVTVFNRGSRPALAGVEQLVGDRQDPAALAQ-LQG 59

Query: 61  ESYDVVAQFIAYTAEDVERDIRLFRNKTKQYIFISSASAY----QKPLADYRITESTPLV 116
            S+DVV       A + +  +     + +Q I++SSA  Y    Q PL      ES P V
Sbjct: 60  RSFDVVFDNTGREAAETQALVASLDGQFQQLIYVSSAGVYAASDQLPLR-----ESDP-V 113

Query: 117 NPYWQYSRHKIAAEEVLMTAYRTTGFPITIVRPSHTYN-GTKPPVSLHGNKGNWQILKRI 175
           +P  ++ R K   E  L    +  G P T  RP + Y  G   P+        W    RI
Sbjct: 114 DPQSRH-RGKFETENWL----QQQGLPFTAFRPVYIYGPGNYNPLE------QW-FFDRI 161

Query: 176 LDGKPVIIPGDGSSLWTLTHSKDFAKGYVGLMANPHAIGNAFHITTDESMTWNQIYQTIA 235
           L  +P+ IPG G  L  L H +D A   V  + NP AIG  ++++ D  ++++ + +  A
Sbjct: 162 LRDRPLPIPGTGLHLTQLGHVEDLATAMVAAVKNPRAIGQIYNLSGDRYVSFDGLARACA 221

Query: 236 DALGKPLNALHVASDFLARHGGNYDFRGELLGDKAA---------TVVFDNSKIKRLVPD 286
            A G+   ALH+          +YD +   LG + A         T +    +    VP 
Sbjct: 222 IAAGRDPQALHLV---------HYDPKQLNLGKRKAFPMRAQHFITAIDQARQDLEWVPR 272

Query: 287 FICTTSMADGLRQSVQ--YMLSHPETQTPDPEFD 318
           F    S+ DGL+ S+Q  Y+    + Q  D   D
Sbjct: 273 F----SLIDGLQNSLQNDYLARGLDQQAVDFSLD 302