Pairwise Alignments

Query, 338 a.a., putative mRNA-binding protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 356 a.a., dTDP-glucose 4,6-dehydratase (RefSeq) from Shewanella loihica PV-4

 Score = 45.8 bits (107), Expect = 2e-09
 Identities = 54/217 (24%), Positives = 87/217 (40%), Gaps = 24/217 (11%)

Query: 110 TESTPLVNPYWQYSRHKIAAEEVLMTAYRTTGFPITIVRPSHTYNGTKPPVSLHGNKGNW 169
           +E +P   P   YS  K AA+ ++   +RT G P+ +   S+ Y   + P  L       
Sbjct: 160 SEQSPYA-PSSPYSASKAAADHLVRAWHRTYGLPVVLSNCSNNYGPYQYPEKLIP----- 213

Query: 170 QILKRILDGKPVIIPGDGSSLWTLTHSKDFAKGYVGLMANPHAIGNAFHITTDESMTWNQ 229
             L   L GK + + GDG  +    +  D A     + A    +G +++I     MT  +
Sbjct: 214 VTLLNALQGKLIPVYGDGKQIRDWLYVDDHAHALCQVAARGE-LGESYNIGGMNEMTNLE 272

Query: 230 IYQTIADALGKPLNALHVA-SDFLARHGGNYDFRGELLGDKAATVVFDNSKIKRLVPDFI 288
           +   I D L + +       SDF    G   D  G            D SK+ R +  + 
Sbjct: 273 VVSLICDLLNQKVTEKPCGISDFRQLIGFVKDRPGH-----DTRYAIDASKLSRTL-GWQ 326

Query: 289 CTTSMADGLRQSVQYMLSHPETQTPDPEFDSWCDRVA 325
            + S A GL ++V + L+H +          WC +VA
Sbjct: 327 PSESFASGLEKTVDWYLTHLD----------WCHQVA 353