Pairwise Alignments

Query, 420 a.a., cation efflux system protein czcC (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 486 a.a., efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family from Sphingomonas koreensis DSMZ 15582

 Score = 49.3 bits (116), Expect = 3e-10
 Identities = 46/251 (18%), Positives = 100/251 (39%), Gaps = 5/251 (1%)

Query: 98  IHLAGQRNKQVRLEKINKEIAEYQFEEVMRTLRQELNEKFVEVYFLSKSIAIYEKEVNSL 157
           +  AG   +++              E+    L  ++   +V +         +E +++  
Sbjct: 153 LEFAGGSRRRIEASNAQAAATVANAEDAKVQLTAQVASTYVNLREAQFRAEQFEAQISLQ 212

Query: 158 QVLLGGMKIQQEKGNISLMEISRLESMLFSLRKEKNERENDLLTTRGELNLLLN-LPEDT 216
           + +L     + ++G + L  +S   + L  L+ +  E E D+      L +L   +P   
Sbjct: 213 EEILALTYQRYQRGALPLFPVSTANAELEMLKSQLAEAEADIAVLSDALAILTGQVPGSV 272

Query: 217 QVQLSLDEEVLQQLDLSQLSFADLKAIINERPDQKIARSTVNASRANLKLQKSMAFPEFS 276
              L+    +   +   Q++  D  +++  RPD + A  ++ AS A + + ++  FP+ S
Sbjct: 273 DAALTTARSI--PMPPEQVAIGDPASLVARRPDIRAAERSLAASTARIGVAEAARFPKLS 330

Query: 277 VKGNYDRVGNFINDYFAIG--VSLSVPIFNRNQGNIKAARFSIQQAGVQQEYAANRADME 334
             G     G+ ++D   +G   +L++P    N  +      +I QAG  +  A       
Sbjct: 331 FTGILGLGGSSLDDVVDVGEFSALAIPRLQWNFLDFGRVDAAIDQAGAARNEAVANYQQT 390

Query: 335 LFTAYTSLEKA 345
           +  A    E+A
Sbjct: 391 VLLALQDAERA 401