Pairwise Alignments

Query, 420 a.a., cation efflux system protein czcC (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 495 a.a., outer membrane efflux protein (RefSeq) from Shewanella sp. ANA-3

 Score = 52.4 bits (124), Expect = 3e-11
 Identities = 63/259 (24%), Positives = 110/259 (42%), Gaps = 30/259 (11%)

Query: 101 AGQRNKQVRLEKINKEIAEYQFEEVMRTLRQELNEKFVEVYFLSKSIAIYEKEVNSLQVL 160
           A +R  +  +     E+ + +   V  +L  ++  ++ E   + +  ++    V   Q  
Sbjct: 172 ANRRASEAAMADYLSEVEKLRLTYV--SLISDIASRYYEWLDIEQRYSVSIDTVGLRQKE 229

Query: 161 LGGMKIQQEKGNISLMEISRLESMLFS-------LRKEKNERENDLLTTRGELNLLLNLP 213
           L   K++   G IS +++ + E  L S       L  E+  + N L    GE +  L  P
Sbjct: 230 LDIAKLRHANGVISGLDVRQAEVELQSTKVTLPTLDYERKYKINQLHILLGEYDYALPSP 289

Query: 214 EDTQVQLSLDEEVLQQLDLSQLSFADLKAIINERPDQKIARSTVNASRANLKLQKSMAFP 273
           +     + L  E         L+      ++  RPD KIA   + A+ A + + K+  FP
Sbjct: 290 QGLPENMGLPYE---------LNTGVPSELLTLRPDVKIAEQQMIAANAEVGIAKAAFFP 340

Query: 274 EFSVKGNYDRVGNFINDYF-AIGVS------LSVPIFNRNQGNIKAARFSIQQAGVQQEY 326
           +F++ G Y R  + + D F + GV+      +S PIFNR  G I AA + I     +Q  
Sbjct: 341 KFTISGVYGRENDHLKDIFDSNGVTWSLLGGISAPIFNR--GKI-AAEYDIATEAAKQSM 397

Query: 327 AANRADMELFTAYTSLEKA 345
            + R    + TAY  +  A
Sbjct: 398 LSYR--NVVLTAYFDVNDA 414



 Score = 28.9 bits (63), Expect = 4e-04
 Identities = 13/35 (37%), Positives = 23/35 (65%)

Query: 249 DQKIARSTVNASRANLKLQKSMAFPEFSVKGNYDR 283
           D ++A+S + A+R+ + +  S  +PE SVK  Y+R
Sbjct: 106 DLQMAQSRLLAARSKMTVVDSALWPEVSVKAGYER 140