Pairwise Alignments

Query, 1035 a.a., putative cation efflux system (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1015 a.a., acriflavin resistance protein (RefSeq) from Shewanella loihica PV-4

 Score =  275 bits (704), Expect = 9e-78
 Identities = 238/1050 (22%), Positives = 465/1050 (44%), Gaps = 95/1050 (9%)

Query: 3    KFLIQRPIAVLMAFTACFIIGLVTYSTLPISLLPNIAIPEITVQVASANTSARELENTIV 62
            +  + RP+   M F A  + GL +   LP+ + P I +P++ ++V    ++  E+E  I 
Sbjct: 5    RLALARPVTTSMFFVAILLFGLASSRLLPLEMFPGIEMPQVLIEVPYKGSTPAEVEREIT 64

Query: 63   KPLRGQLIQVSTLKDIHSESRDGAGIIRLSFEYGTNTDLAFIEVNEKIDAAMNYLPKEAE 122
              L   L  +  ++++ S S      I L  ++G N     +E  EK+DA  + LPK+ E
Sbjct: 65   NVLEESLATMGGIEELRSRSSQNGAEIELRMKWGENVSTKSLEAREKVDAVRHLLPKDVE 124

Query: 123  RPKVIKASATDIPVFYLNLTLKNDSAYGATEQHSFLELCEFAESVIKRRIEQLEEVAMVD 182
            R  + + S  D+PV  + ++ + + + GA          +  +  +K+ +E++E V+ V 
Sbjct: 125  RVFIRQFSTADMPVLTIRISSERELS-GA---------FDLLDKQLKKPLERVEGVSQVT 174

Query: 183  VTGILERQVQIVPDKDKLAMMGLSIGDIESALSSNNVEPGSMTVRDGYYEYNIKFSTLLR 242
            + G+ ++Q++I  D DKL+  G+S   ++  L   N    + T+R     Y +      R
Sbjct: 175  LYGVEQKQIEIRIDADKLSATGISSAMLQQRLGQENFIVSAGTLRANTRVYQVSPKGEFR 234

Query: 243  TAEDVENIYLRKGDRIVQLKDFCKVS-VVPVKEKGVSLSNGKRAVSLAVIKQADENMDKM 301
              +D+  + L  G   V L D   +   +P +  G  L   K AV L V K++  N+  +
Sbjct: 235  DLDDIAALVLIPG---VTLGDVATIRYALPERLDGRHLDQ-KYAVGLDVFKESGANLVDV 290

Query: 302  KQALVGTMTYFQ--LVYPEIDFSISRNQTELLDYTISNLQQNLSLGFLFICLVAVLFLGD 359
             + ++  +   +    +  I   I  +Q   +  ++S+L     +G L    V  LFL +
Sbjct: 291  SERVLKVIEAAKQDQQFNGIKLFIMEDQAYGVKSSLSDLLAAGLIGALLSFAVLYLFLRN 350

Query: 360  VKSPLVIGLSMVVSIVISFVFFYLCNMSLNIISLAGLILALGMMIDSSIIVTENISQYRE 419
            +K  LV+  S+ +S+ ++    Y    SLNI+S+ GL+LA+GM+ID++++V+E++ Q ++
Sbjct: 351  LKMTLVVVSSVPISLCMTLAGMYFLGYSLNILSMMGLLLAVGMLIDNAVVVSESVLQEKQ 410

Query: 420  R--GYSLRRACVTGTSEVVTPMLSSSLTTIAVFAPLIFMSGIAGAIFFDQ-AFSVTVGLM 476
                 +  +A +TG ++V   +L+ +LTT  VF P IF   +   IF +  A ++ + L 
Sbjct: 411  HQGTATTSQAVLTGVNKVALAVLAGTLTTAIVFLPNIFGVKVELTIFLEHVAIAICISLA 470

Query: 477  VSYLTGIMLLPVLYLLVYRTGVRTRKWKWLSFKFNNPIKDHTLDRFYDAGVDWVFRHKTF 536
             S L    L+P++                L F+     K   L+ FY+  + W+      
Sbjct: 471  ASLLVAKTLIPLMLTK-------------LHFEIETNPKQSKLESFYERSLAWILHRPKR 517

Query: 537  SVLFCVISIPLCVFFFFFIDKERMPDIEENELIARIEWNENIHVDENKRRVDELFKELKD 596
            S L  V+ +         + +++      N L    +      +D  +  ++ +      
Sbjct: 518  SGLIAVVILASTALPLSMVQQDQNDGEGNNRLYINYQVEGRHSLDVTEAMINRM------ 571

Query: 597  EVLEQTASIGRQDFILNRERELSSSEAELYFRTETSNAIASLEQ-------AVYRKLKER 649
                       +D++   +          YF  +   +   L++       A+ RK++E 
Sbjct: 572  -----------EDYLYANKEAFYIDSVYSYFSADRGQSTLLLQEDADIDIKALKRKIREG 620

Query: 650  YPLSVISFSPPETVF----EKLFVTGEPDVVAEFYTRNKAEAP---KAEAIRSVEQELGR 702
            +P    S + P+  +      + VT      +E  T ++   P   K + +  V  EL  
Sbjct: 621  FP--KFSIAKPQFGWGNDNNGIRVTLTGRSTSELITISEQVVPMLAKIDGLIDVRSELN- 677

Query: 703  KTGINPTGIAFENQLNLSISKEKLLLYRVSYNELYRVLKTAFRENSV-TMLHSYQQYLPI 761
                     + + ++ + + +       +S +EL R +  A R + + +  H     L I
Sbjct: 678  ---------STQQEVIIELDRTMAARLDLSLSELARSVSMALRGSPLRSFRHDPSGELRI 728

Query: 762  NIAGDEKTVNEVLQETLVQTQPDNRGN-VDFIPLRELINVAPAEDL-------KSITSGR 813
             +A D++    +  E L +     +GN V  +     I++ P  D         +++ G 
Sbjct: 729  ELAYDKQWRESL--ERLKELPIVRQGNRVYTLQSLAEISIRPRFDTIRHYDRQTALSIGA 786

Query: 814  NGEYVPFDFYGVQDANRLMREVKQVAEETGDWDTGFSGSIFSNKEMLDELVVILLISLLL 873
            N      D    ++A + +++V    +    +     G      E    +   +++++ +
Sbjct: 787  N-----LDEMTTEEAQKAIKQVMDAVQFPAGYGYSLRGGFQRQDEDQAIMATNMILAIAM 841

Query: 874  MYFILAAQFESFLQPLLVLAEIPIDVAFALLLLWICGHTLNLMSAIGLIVTCGIVINDSI 933
            +Y ++AA FES L P  ++  I   +      L + G ++++M+ IG+++  GIV+N+ I
Sbjct: 842  IYIVMAALFESLLLPTAIITSILFSITGVFWALLLTGTSMSIMAMIGILILMGIVVNNGI 901

Query: 934  LKLDAINELRKAGVPLLEAIHEAGRRRLRPIIMTSLTTIFAMVPLLFSSDM---GSELQK 990
            + +D IN+       L   I      RLRP++MT  TT+  ++PL         G     
Sbjct: 902  VLVDQINQKTPELDRLSATIKAVCITRLRPVLMTVGTTVLGLIPLAMGDTQIGGGGPPYS 961

Query: 991  PLSIAMIGTMSIGTAVSLFIIPLLYWFIYR 1020
            P++IA+IG +S  T  SL+++PL Y  +YR
Sbjct: 962  PMAIAIIGGLSFSTLTSLYLVPLCYQALYR 991