Pairwise Alignments

Query, 194 a.a., Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfE (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 207 a.a., Na(+)-translocating NADH-quinone reductase subunit D (RefSeq) from Shewanella loihica PV-4

 Score =  132 bits (331), Expect = 5e-36
 Identities = 75/194 (38%), Positives = 113/194 (58%), Gaps = 6/194 (3%)

Query: 6   VMMNGIIKENPIFVLLLGMCPTLGTTSSAINGMGMGLATMFVLICSNVVISSIKNLIPDM 65
           ++   I   NP+ + +LG+C  L  ++S    + M LA  FVL+ SN++ISSI+N IP+ 
Sbjct: 11  ILTGPIFANNPVAMQVLGVCSALAVSNSMQTALVMTLAVTFVLVFSNLIISSIRNFIPNS 70

Query: 66  VRIPSFIVVIASFVTLLQMIMQAYVPDLYATLGLFIPLIVVNCIVLGRAEAFAAKNNPLA 125
           VRI + + VIAS V ++ M++Q    +L   L +F+ LI+ NCI++GRAEAFA K  P  
Sbjct: 71  VRIIAQMTVIASLVIIVDMVLQDVAYELSRQLSVFVGLIITNCIIMGRAEAFAMKMPPHL 130

Query: 126 SMFDGIGMGFGFTIALTLLGAVREFLGTGKIFNLTILP--EEYGMLI----FVLAPGAFI 179
           ++ D +G   G+ + L  +  VRE LG G +F   IL   E  G  +    F L P AF 
Sbjct: 131 AVVDAMGNAMGYGVILLSVAFVRELLGAGTLFGHEILKTVENDGWYLANEMFKLPPSAFF 190

Query: 180 ALGYLIAIINSLKK 193
            +G LI  IN +++
Sbjct: 191 LIGLLIWAINVIQR 204