Pairwise Alignments

Query, 367 a.a., putative ABC transporter ATP-binding protein or permease protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 366 a.a., ABC-2 type transporter (RefSeq) from Shewanella loihica PV-4

 Score =  214 bits (544), Expect = 4e-60
 Identities = 116/370 (31%), Positives = 222/370 (60%), Gaps = 12/370 (3%)

Query: 1   MKQFIAFVKKEFYHIFRDRRTMLILLGMPVVQIILFGFAISTEVKNVRLAVLDPSNDVVT 60
           +++  +   KE   + RDR T  +++ +P++Q++LFG+AI+T+V+NV + V+D S+    
Sbjct: 6   LRRIKSITTKEIRQLKRDRITFGMVVMIPLIQLLLFGYAINTDVRNVPVVVVDQSHSAAG 65

Query: 61  RKIIDRLDASEYFTVTTRFHSPQEMETAFRKNKIDMAIVFGERFADGLYTGDARVQLIVD 120
           R I++ +  ++  ++   + S +E E A  + ++  A++      + L  G+   Q +VD
Sbjct: 66  RWIVEAVKVTQVVSIEKHYASAEEAEAAITRGEVRAALILPPNLTEKLANGETLGQWVVD 125

Query: 121 ATDPNMSTSQS---NYAASIVSSAGQEMLPPNVFVSRLTPDVKLLYNPQMKSAYNFVPGV 177
            +D  ++++ S   N     ++    + LP        T +V L YNP+ +SA N VPG+
Sbjct: 126 GSDTMVASAISQLRNMPLDQITGQDTQRLP--------TFEVALFYNPEQRSAVNIVPGL 177

Query: 178 MGLILMLICAMMTSISIVREKETGTMEVLLVSPVRPLFIVLAKAVPYFVLSFVNLTTILL 237
           + +IL +   + TS +IVRE+E G +E+L+ +P++PL ++L K VPY ++  V +T IL 
Sbjct: 178 IAVILTMTMILFTSAAIVRERERGNLELLITTPIKPLELMLGKIVPYILVGLVQMTIILG 237

Query: 238 LSVFVLDVPVVGSLFWLVMVSLLFIFVSLALGLLISSVTSTQVAAMLASGMILMMPTMVL 297
           L   + DVP+ G++  L+M +LLFI  SL LGL+IS++  TQ+ AM  + + +++PT++L
Sbjct: 238 LGHLIFDVPINGAIAQLLMGTLLFIAASLTLGLIISTIAKTQLQAMQMT-IFIILPTILL 296

Query: 298 SGMIFPVESMPVILRAISDIIPARWYIQAVRKLMIEGVPVVLVLKEIGILLLMAVVLITI 357
           SG +FP E+MP   + I++++PA  +++ +R +++ G  +  +  +   L+   +V I +
Sbjct: 297 SGFMFPFEAMPKPAQWIAELLPATHFMRIIRAIVLRGGALSDMQFDALWLIGFTLVGILV 356

Query: 358 SIRKFKYRLE 367
           +  +F  RL+
Sbjct: 357 ASLRFNKRLD 366