Pairwise Alignments

Query, 367 a.a., putative ABC transporter ATP-binding protein or permease protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 373 a.a., ABC-2 type transporter (RefSeq) from Shewanella sp. ANA-3

 Score =  184 bits (466), Expect = 4e-51
 Identities = 117/381 (30%), Positives = 214/381 (56%), Gaps = 23/381 (6%)

Query: 1   MKQFIAFVKKEFYHIFRDRRTMLILLGMPVVQIILFGFAISTEVKNVRLAVLDPSNDVVT 60
           +++  A V KE   + RDR T  +++ +P+VQ++LFG+AI+T+ +++   +++ S+   +
Sbjct: 2   LRRIWAVVVKELRQLSRDRMTFGMIVMIPLVQLMLFGYAINTDARHLPAGLVNLSDSAYS 61

Query: 61  RKIIDRLDASEYFTVTTRFHSPQEMETAFRKNKIDMAIVFG----ER------FADGLYT 110
           R ++  ++A++      R+ S  E + A  + ++   +  G    ER      FA   Y 
Sbjct: 62  RALVKAVEATQVVDFKHRYLSAAEADAAITRGEVKAVLYLGADLDERLVRHPAFAGQAYF 121

Query: 111 GDARVQLIVDATDPNM-STSQSNYAASIVSSAGQEML--PPNVFVSRLTPDVKLLYNPQM 167
            +   Q +VD +D  + ST +S     +   AG+ +   PP+        +V   +NP+ 
Sbjct: 122 AEPVGQWLVDGSDTVVASTIRSLRQMPLDEIAGRAVKSNPPSF-------EVVQYFNPEQ 174

Query: 168 KSAYNFVPGVMGLILMLICAMMTSISIVREKETGTMEVLLVSPVRPLFIVLAKAVPYFVL 227
           +S  N VPG++G+IL +   M TS +IVRE+E G ME L+ +PVRPL ++L K  PY ++
Sbjct: 175 RSVVNIVPGLLGVILTMTMVMFTSAAIVREREQGNMEFLITTPVRPLELMLGKITPYVLV 234

Query: 228 SFVNLTTILLLSVFVLDVPVVGSLFWLVMVSLLFIFVSLALGLLISSVTSTQVAAMLASG 287
            FV L  IL     +  VP+ G L  + + ++LFI  SL LGL+IS++  TQ+ +M  + 
Sbjct: 235 GFVQLAIILSAGHLLFAVPIRGGLDSIALAAMLFICASLTLGLVISTIAKTQLQSMQMT- 293

Query: 288 MILMMPTMVLSGMIFPVESMPVILRAISDIIPARWYIQAVRKLMIEGVPVV-LVLKEIGI 346
           + +++P+++LSG +FP E+MPV  + I++ +PA  +++  R +++    V  L    + +
Sbjct: 294 VFILLPSILLSGFMFPYEAMPVAAQWIAEALPATHFMRMSRAIVLRDAEVSDLQFDALWM 353

Query: 347 LLLMAVVLITISIRKFKYRLE 367
           +    + L+  S+R F  RL+
Sbjct: 354 IGFTCLGLLVASLR-FSKRLD 373