Pairwise Alignments

Query, 394 a.a., tryptophan synthase beta chain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 403 a.a., tryptophan synthase subunit beta (RefSeq) from Shewanella loihica PV-4

 Score =  388 bits (997), Expect = e-112
 Identities = 204/388 (52%), Positives = 264/388 (68%), Gaps = 3/388 (0%)

Query: 9   DGYYGEFGGAYVPEILHKCVEELKNTYLGVLESEDFKKEFDQLLRDYVGRPSPLYLARRL 68
           D Y+GE+GG +VP+IL   +++L+  ++       F+ EF  LL++Y GRP+ L L R L
Sbjct: 6   DPYFGEYGGMFVPQILMPALKQLEAAFVDAQNDPSFQAEFTDLLKNYAGRPTALTLTRNL 65

Query: 69  SEKYGCKMYLKREDLNHTGAHKINNTIGQILLARRMGKKRIIAETGAGQHGVATATVCAL 128
           S     K+YLKREDL H GAHK N  +GQ LLA+RMGKK IIAETGAGQHGVATA  CAL
Sbjct: 66  SPNPLVKIYLKREDLLHGGAHKTNQVLGQALLAKRMGKKEIIAETGAGQHGVATALACAL 125

Query: 129 MDMECIVYMGKTDVERQHINVEKMKMLGATVIPVTSGNMTLKDATNEAIRDWCCHPADTY 188
           + ++C VYMG  DVERQ  NV +M+++GA VIPVTSG+ TLKDA NEA+RDW       +
Sbjct: 126 LGLKCKVYMGAKDVERQSPNVFRMRLMGAEVIPVTSGSATLKDACNEAMRDWSASYDKAH 185

Query: 189 YIIGSTVGPHPYPDMVARLQSVISEEIKKQLMEKEGRDHPDYLIACVGGGSNAAGTIYHY 248
           Y++G+  GPHP+P +V   Q +I EE K Q++E+EGR  PD +IACVGGGSNA G    +
Sbjct: 186 YLLGTAAGPHPFPTIVREFQRMIGEETKAQILEREGR-LPDAVIACVGGGSNAIGMFADF 244

Query: 249 INDGRVGIILAEAGGKGIETGMTAATIQLGKMGIIHGARTYVIQNEDGQIEEPYSISAGL 308
           I++  V +I  E  G GI+T    A ++ GK GI  G +  ++Q+++GQIEE YSISAGL
Sbjct: 245 IDEPSVKLIGVEPAGLGIDTPKHGAPLKHGKTGIFFGMKAPLMQDKEGQIEESYSISAGL 304

Query: 309 DYPGIGPIHANLAAQRRATVLAVNDDEAIEAAYELTKLEGIIPALESAHALGALKKL--K 366
           D+P +GP HA+LAA  RAT  +  DDEA+ A   L + EGIIPALESAHAL    KL   
Sbjct: 305 DFPSVGPQHAHLAATGRATYESATDDEALAAFQLLARSEGIIPALESAHALAYAIKLAEA 364

Query: 367 FKPEDVVVLTVSGRGDKDIETYLSFNEK 394
              E ++V+ +SGRGDKDI T     EK
Sbjct: 365 ATEETLLVVNLSGRGDKDIFTVADILEK 392