Pairwise Alignments

Query, 435 a.a., phenylacetate-coenzyme A ligase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 446 a.a., capsule biosynthesis protein CapK from Vibrio cholerae E7946 ATCC 55056

 Score = 79.3 bits (194), Expect = 2e-19
 Identities = 90/333 (27%), Positives = 139/333 (41%), Gaps = 39/333 (11%)

Query: 14  SREKLQELQLQRLKKTINIAANS-PYYKEVFSKNGITGDSIQSLDDIRKIPFTTKSDMRA 72
           SR  L + Q ++LKKT+  A N  P+Y+++   N           ++   P+  KS +R 
Sbjct: 48  SRTHLADYQHKQLKKTLENARNHVPFYQDLEVPNL----------ELEAFPYLDKSVLRR 97

Query: 73  NYPFGLVAGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTD-- 130
           ++   +     K   V   ++SGTTG P  I+  +H +      VAR L   G RK D  
Sbjct: 98  DHKQFI--SQNKPSVVVKGATSGTTGTPLTILQDRHSVIREQAFVARQLAWAGYRKGDKR 155

Query: 131 -------VFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHA 183
                  V   S   G F     F+           P    +    ++ + DF    + A
Sbjct: 156 AWIRGDMVVPLSQKQGPFWRYSWFEQMIVLSSFHLTPKTMSS---YLQAMVDFGVEVIQA 212

Query: 184 IPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMN 243
            PS    LA  + E         LK+++  +E  + E R+ IE     K ++ +G+ E  
Sbjct: 213 YPSSIATLAR-YLEANQSYYPAKLKSIMTSSESLSAEDRQVIETRFGCKVFDWYGLFER- 270

Query: 244 GPGVAFECQEQNGM-HFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDREMMPLIRYRT 302
              VA   Q ++G  H   D   VE++    G         ELV T  + +  PLIRY+T
Sbjct: 271 ---VAAIGQCEHGRYHLLSDYSHVELLAAGDGRY-------ELVGTNFNNQYFPLIRYKT 320

Query: 303 RDLTRILPGK-CPCGRTHLRIDRIKGRSDDMFI 334
            D   +   + CPCGR    I+RI+GR  D  +
Sbjct: 321 GDHVHLSENEACPCGRVFPVIERIEGRIGDYLV 353