Pairwise Alignments

Query, 517 a.a., putative Na+/sulfate symporter (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 575 a.a., TrkA domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  147 bits (371), Expect = 1e-39
 Identities = 95/286 (33%), Positives = 154/286 (53%), Gaps = 19/286 (6%)

Query: 235 INKKLSDFNFQRHYGAEVKEIKTRNGQRYVDHLEDVVLREGDTLVVMADDTFIPTWGESS 294
           + K +    F+  + A    I+ R+G+     L +V ++ GD LV+     F+     S 
Sbjct: 306 VGKTMKKAGFRALFDAAAVAIR-RDGEEISGKLGEVQIKAGDFLVLAVGKDFLTRHNISK 364

Query: 295 VFVLLTNGNDPDTSGK-KKRWLALILLVLMIVGATVGELPATKEMFPDIKLDMFFFVCIT 353
            F++++ G +P+T    KK W+++   VL +V A  G +   + M             + 
Sbjct: 365 NFIVIS-GVEPETRNNGKKAWISIGGFVLTLVLAATGVVEMLQGML------------LL 411

Query: 354 TIIMAWTNIFPARKYTKYISWDILITIACAFAISKAMVNSGVADCVAGFIIGLSDDYGPH 413
             ++ +T      +  +    DI + +A A  +S A+VNSGVA+ VA ++ G ++    H
Sbjct: 412 LGVLIFTQCLNVNEVVRRFPVDIWLVVASAILLSHALVNSGVAELVASWVEGTAEK--EH 469

Query: 414 VLLAILFVI--TNLFTELITNNAAAALAFPLALSISAQLGVSPTPFFVVICMAASASFST 471
           ++LA+L V   T L TELITNNAAAAL FP+A SI+   GV   PF + +  AAS SF +
Sbjct: 470 LMLALLLVYLATWLMTELITNNAAAALMFPIAYSIALGFGVDFLPFVMTVAFAASGSFIS 529

Query: 472 PIGYQTNLIVQGIGNYKFTDFVRIGLPLNIITFLISVILIPLIWNF 517
           P GYQTNL+V   G Y+  DFV++G+P+++    I ++ +PL + F
Sbjct: 530 PYGYQTNLMVYNAGRYRLMDFVKVGVPVSLTYGAIVLLTVPLFFPF 575



 Score =  111 bits (277), Expect = 8e-29
 Identities = 83/283 (29%), Positives = 136/283 (48%), Gaps = 16/283 (5%)

Query: 1   MTFEIVFVLLSLLGMMAALIADKMRPGMVLFSVVVLFLCVGILTPKEMLEGFSNKGMITV 60
           MTF     +   L  +  L+  + RP +V    +++ +   ++T +++L   SN G++T+
Sbjct: 1   MTFNAYLTIAIFLATIVGLVRFQNRPALVFGVTLLVLVAFNLVTKEQLLSSMSNPGLVTL 60

Query: 61  ALLFLVSEGIRQSGTLGQVIKKLLPQGKTTVFKAQLRILPSVAFISAFLNNTPVVVIFAP 120
            LL L S  + ++  L  +  K++  G  T +   LR+    A  SA LNNT VV     
Sbjct: 61  VLLILCSFALEKTRLLRVIAAKVIVSGYRTTW---LRLYGMTALSSALLNNTAVVATLLS 117

Query: 121 IIKHWAKSVKLPATKFLIPLSYVTILGGICTLIGTSTNLVVHGMILEAGYEGFTMFELGK 180
            I++    V   A+K L+PLSY  ILGG  TL+GTSTNL+V+ M+++A  +  + F    
Sbjct: 118 PIRNNPHHV---ASKLLLPLSYAAILGGTLTLVGTSTNLIVNSMVIDASNQSLSFFSFTA 174

Query: 181 VGIFIAIAGIIYLFIFSKRLLPDARPDTAVPDEEVEEGEKLHRVEAVLGARFPGINKKLS 240
           +G  + +   + L I S+ L     PD A      E   K + ++A + A    I + + 
Sbjct: 175 IGALLVLGCGLVLRIASRWL-----PDIA----HQETCSKGYFIDAKVVAGSELIGRSVE 225

Query: 241 DFNFQRHYGAEVKEIKTRNGQRYVDHLEDVVLREGDTLVVMAD 283
           D N  RH  +       RNG+         VL++ D L+   D
Sbjct: 226 D-NGLRHLESLFLVEVVRNGRLISPVTPTEVLQQDDRLIFSGD 267