Pairwise Alignments

Query, 457 a.a., outer membrane protein oprM precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 494 a.a., efflux transporter outer membrane subunit from Pseudomonas fluorescens SBW25-INTG

 Score =  200 bits (508), Expect = 1e-55
 Identities = 137/465 (29%), Positives = 225/465 (48%), Gaps = 20/465 (4%)

Query: 8   IAILLFAGILTSCKVGKSYVRPDLHLPDSLAQHQDTVSFGDQD------WEEIYTDSTLR 61
           + ++L   +L++C +G  Y RPD+  P    + Q        D      W E+Y D  L 
Sbjct: 23  LVMVLCGVLLSACAIGPDYKRPDVIEPAQFKEAQGWRQATPSDSLARGAWWELYGDRQLN 82

Query: 62  SLIDRALDHNKDMLIAAARIKEMAAQKRISTAALLPDIKGKVTAERELENHGGDAFKKS- 120
            L+ R    N+ +  A AR ++  A  R S  A  P +   V   R  +  G  +   S 
Sbjct: 83  DLVLRLNTSNQTVAQAEARFRQAQALVRSSRGAFYPSVDLSVGKTRASQGTGSSSASLSS 142

Query: 121 ------DTFEAQFLVSWELDLWGNLRWARSASIAEYLQSVEAQRALQMTIVAEVAQAYYE 174
                 DT  AQ  VSWE D+WG LR    A+ A    S     A++++  +E+ Q+Y +
Sbjct: 143 SSSGIRDTLNAQLGVSWEADIWGKLRRGLEANEASAEASSADLAAMRLSQQSELVQSYLQ 202

Query: 175 LVALDTELDIVKQTLKAREEGVRLARIRFEGGLTSETSYRQAQVELARTATLVPDLERKI 234
           L  +D +  +++ TL+  +  +++   ++  G++ + +  QAQ +L  T   + DL  + 
Sbjct: 203 LRVMDEQTRLLQATLETYQRSLQMTENQYRAGVSGKDAVAQAQTQLKTTQASLIDLIWQR 262

Query: 235 SLKENDIAFLAGEYPNRIARSRLLQEFNFP--ETLPIGMPSTLLERRPDIRQAEQKLIAA 292
           +  EN IA L GE P   A   L    + P    +P+ +PS LLERRPDI  AE+ +IAA
Sbjct: 263 AQLENAIAVLIGEAP---ANFNLAVSKDIPALPQIPVSLPSQLLERRPDIASAERSVIAA 319

Query: 293 NAKVGVAYTNMFPRLALTGGFGSESTSLSELLKSP--YAVMEGALLTPIFGWGKNRAALK 350
           NA +GVA    +P L+L+   G  S++ ++ +  P  +  +   L   +F  G+  A + 
Sbjct: 320 NANIGVAKAAYYPDLSLSLAGGYSSSTYADWISLPNRFWSVGPKLAMTLFDGGQRSAEVD 379

Query: 351 GKKAAYEAEIHSYEKTVLTAFKETRNAIVNFNKIKEVYALRANLERSAKSYMDLAQLQYI 410
              A+Y+  +  Y +TVL  F+E  N +V    +++   +      +A+  + L Q QY 
Sbjct: 380 RTVASYDETVAKYRQTVLDGFREVENYMVQLKVLEDEAVVSNEALEAARESLRLTQNQYE 439

Query: 411 NGVINYLDVLDAQRGYFDAQIGLSNAIRDELITVVQLYKALGGGW 455
            G+I YLDV+  Q      +  +   ++  L+  VQL  ALGGGW
Sbjct: 440 AGLIAYLDVVTVQATALSNERTVLTLLQTRLVASVQLIAALGGGW 484