Pairwise Alignments

Query, 457 a.a., outer membrane protein oprM precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 481 a.a., efflux transporter outer membrane subunit from Pseudomonas fluorescens SBW25-INTG

 Score =  202 bits (515), Expect = 1e-56
 Identities = 136/467 (29%), Positives = 234/467 (50%), Gaps = 36/467 (7%)

Query: 17  LTSCKVGKSYVRPDLHLPDSLAQHQDTVSFGDQD------------WEEIYTDSTLRSLI 64
           L++C VG     PD H P SL   Q     G Q             W +++ D+ L +L 
Sbjct: 14  LSACTVG-----PDFHKPQSLPVSQWNEPQGRQATSRAVSDPLQERWWDVFHDAQLSALT 68

Query: 65  DRALDHNKDMLIAAARIKEMAAQKRISTAALLPDIKGKVTAERELE----------NHGG 114
            RAL  N D+ +A++R+++  A ++++TA   P++       R+            N+G 
Sbjct: 69  RRALTDNLDLKLASSRLQQSRAVRQVTTAERYPNLSANADYLRQRNSGKGLSDPSGNNGR 128

Query: 115 DAFKKSDTFEAQFLVSWELDLWGNLRWARSASIAEYLQSVEAQRALQMTIVAEVAQAYYE 174
            AF + D     F  SWELD WG ++    A+ A    + + +RA+ ++++AE AQ Y +
Sbjct: 129 SAFNQWDM---GFSASWELDFWGRVKRETEAADATLQVAEDDRRAVLLSVLAETAQDYIQ 185

Query: 175 LVALDTELDIVKQTLKAREEGVRLARIRFEGGLTSETSYRQAQVELARTATLVPDLERKI 234
           L  +     + +Q L      ++L+++R   G+ ++    +A  ++A     +PDL+++ 
Sbjct: 186 LRGVQNTRAVTEQNLDVARHSLKLSQLRLADGVATDLDVAEAAAQVAAIEARLPDLQQRQ 245

Query: 235 SLKENDIAFLAGEYPNRIARSRLLQEFNFPET---LPIGMPSTLLERRPDIRQAEQKLIA 291
               N ++ L GE P  +  ++L ++   P+T   + IG+PS L ERRPDIRQAE +L A
Sbjct: 246 DQLINALSLLMGEPPQAL-HAQLSKDAAVPQTQRQVAIGLPSELAERRPDIRQAEARLHA 304

Query: 292 ANAKVGVAYTNMFPRLALTGGFGSESTSLSEL--LKSPYAVMEGALLTPIFGWGKNRAAL 349
           A A +GVA  + +PR+ L+G  GS++  LS+L    S           P+F  G+ +  L
Sbjct: 305 ATASIGVAKGDFYPRITLSGSLGSQAMQLSDLGSWGSRAFAFGPQFSLPLFNGGRLQGML 364

Query: 350 KGKKAAYEAEIHSYEKTVLTAFKETRNAIVNFNKIKEVYALRANLERSAKSYMDLAQLQY 409
             ++A  +    +Y++TVL A+ E  + +  +N  +      A   R  +  +  AQ QY
Sbjct: 365 NLREAQQQEAALAYQQTVLRAWHEIDDQLTRYNASQLRRDSLAEAVRQNQIALSTAQQQY 424

Query: 410 INGVINYLDVLDAQRGYFDAQIGLSNAIRDELITVVQLYKALGGGWK 456
           + GV+++++VL  Q      Q     +     + +V LYKALGGGW+
Sbjct: 425 VEGVVDFVNVLTVQSALLATQEQWVESSTGVSLAMVGLYKALGGGWE 471