Pairwise Alignments

Query, 457 a.a., outer membrane protein oprM precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 466 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  223 bits (567), Expect = 1e-62
 Identities = 149/460 (32%), Positives = 231/460 (50%), Gaps = 13/460 (2%)

Query: 9   AILLFAGILT-SCKVGKSYVRPDLHLPDSLAQHQ--DTVSFGDQDWEEIYTDSTLRSLID 65
           +IL+   IL+ S  V K Y RP L        +   DT +  D  W+ +++D+TL+SLI 
Sbjct: 8   SILIGLAILSLSACVTKKYERPQLKSEGLYRDNNTTDTTTIADLQWKTLFSDTTLQSLIQ 67

Query: 66  RALDHNKDMLIAAARIKEMAAQKRISTAALLPDIKGKVTAERELENHGGDAFK------- 118
           + ++ N D+  A  RIK   A    S  ALLP ++  V       +     F        
Sbjct: 68  QGINENLDLKQAIERIKIAEATLIQSRGALLPSLQADVNVTDNKASAAAQNFPAGININL 127

Query: 119 KSDTFEAQFLVSWELDLWGNLRWARSASIAEYLQSVEAQRALQMTIVAEVAQAYYELVAL 178
           ++ T++AQ   SWE D+WG L  A+  + A  LQS  A+RA+Q  ++A +A  YY L+AL
Sbjct: 128 ETQTYKAQLSTSWEADIWGKLSSAKRGAYATLLQSDAAKRAVQTQLIATIANNYYTLLAL 187

Query: 179 DTELDIVKQTLKAREEGVRLARIRFEGGLTSETSYRQAQVELARTATLVPDLERKISLKE 238
           D +L I +QT+K R + V   +   +G + +  +  Q++  L      +PDL+R I   E
Sbjct: 188 DKQLAITEQTIKVRTQDVETMKALKQGAVVNGAAVVQSEANLYAAQVTLPDLKRSIKEAE 247

Query: 239 NDIAFLAGEYPNRIARSRLLQEFNFPETLPIGMPSTLLERRPDIRQAEQKLIAANAKVGV 298
           N ++ L  + PN I R+ L Q+  +   L  G+ + LL+ RPD+  AE    +A     V
Sbjct: 248 NALSVLVAKAPNAINRTTLDQQTPY-ANLQTGVSAQLLKNRPDVIAAEFGFRSAFENTNV 306

Query: 299 AYTNMFPRLALTGGFGSESTSLSELL-KSPYAVMEGALLTPIFGWGKNRAALKGKKAAYE 357
           A    +P L +T   G  S  L +   KS +  + G L  PIF  G N+A LK  +A  +
Sbjct: 307 AKAYFYPALTITAAGGLSSLQLQDFFSKSIFYNLVGGLTQPIFAKGANKARLKTAEANQQ 366

Query: 358 AEIHSYEKTVLTAFKETRNAIVNFNKIKEVYALRANLERSAKSYMDLA-QLQYINGVINY 416
              +++++T+LT  +E  NA+  +    E    RA    S    +D   +L   +   NY
Sbjct: 367 IAFYNFQQTLLTGGQEVSNALYAYQTASEKEETRAKQIASLTKAVDFTKELLRYSSATNY 426

Query: 417 LDVLDAQRGYFDAQIGLSNAIRDELITVVQLYKALGGGWK 456
            DVL +++    AQ+   N    +L +VV LY+ALGGGWK
Sbjct: 427 TDVLTSEQSLLTAQLSGINDRLQKLQSVVNLYRALGGGWK 466