Pairwise Alignments

Query, 457 a.a., outer membrane protein oprM precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 477 a.a., RND transporter from Pedobacter sp. GW460-11-11-14-LB5

 Score =  213 bits (542), Expect = 1e-59
 Identities = 140/479 (29%), Positives = 245/479 (51%), Gaps = 33/479 (6%)

Query: 4   NKLY--IAILLFAGILTSCKVGKSYVRPD-LHLPDSLAQHQDTVSFGDQDWEEIYTDSTL 60
           N +Y  + ++L     T+C++ +   R +  ++P +    QDTVS     W + +TD  L
Sbjct: 4   NNIYKGLGLVLICAAYTACRLPEVAQRTENKNVPVAFGSAQDTVSTASIQWRKFFTDPNL 63

Query: 61  RSLIDRALDHNKDMLIAAARIKEMAAQKRISTAALLPDIKGKVTAE-----RELENHGGD 115
            +LID AL +N+++ I    I+    + +     LLP +  +V A      R   +  GD
Sbjct: 64  VNLIDTALKNNQELNITLQDIEIAKNEIKAKKGELLPSVNYRVGAGLDKVGRYTSSGAGD 123

Query: 116 AFKKSD------------TFEAQFLVSWELDLWGNLRWARSASIAEYLQSVEAQRALQMT 163
           A  +              TF  Q   +WE D+W  LR A+  +I+ YL +VE +  +   
Sbjct: 124 ASTEITPGKEVPEILPDYTFGLQ--ANWEADIWHKLRNAKKGAISHYLATVEGKNFVVTN 181

Query: 164 IVAEVAQAYYELVALDTELDIVKQTLKAREEGVRLARIRFEGGLTSETSYRQAQVELART 223
           ++AEVA +YYEL+A D +L+ VK+ ++ ++  + L +I+ E    +E + R+ + E+  +
Sbjct: 182 LIAEVANSYYELLAADNQLETVKKNIELQKNALELMKIQKEASRVNELAVRKFEAEVLSS 241

Query: 224 ATLVPDLERKISLKENDIAFLAGEYPNRIARSRLLQEFNFPETLPIGMPSTLLERRPDIR 283
            +L  D+++ I+  EN I FL G +P  I R +       P T+  G+PS LL  RPDI+
Sbjct: 242 KSLEFDIQQNITETENKINFLLGRFPQLIIRDKSSFTDLVPPTVQTGLPSQLLANRPDIK 301

Query: 284 QAEQKLIAANAKVGVAYTNMFPRLALTGGFGSESTSLSELLKSPYAV---MEGALLTPIF 340
           QAE +L AA   V VA    +P L ++   G ++ + S LL++P ++   + G L  P+ 
Sbjct: 302 QAELELAAAKLDVKVAKAQFYPSLGISATIGYQAFNPSYLLRTPESLIYSLAGDLAGPLI 361

Query: 341 GWGKNRAALKGKKAAYEAE----IHSYEKTVLTAFKETRNAIVNFNKIKEVYALRANLER 396
               NR A+K +     A+    ++ YEKT+L  + E  N +   + +++ Y L++    
Sbjct: 362 ----NRNAIKAEYLTANAKQLQAVYDYEKTILNGYIEVANQMSKISNLQKSYDLKSKQVT 417

Query: 397 SAKSYMDLAQLQYINGVINYLDVLDAQRGYFDAQIGLSNAIRDELITVVQLYKALGGGW 455
           +    +D++   + +   +Y +VL  QR    +++ L    + +L  VV +Y ALGGGW
Sbjct: 418 ALTQSIDISNDLFKSARADYFEVLMTQRDALQSKLELIETKKQQLNAVVDIYHALGGGW 476