Pairwise Alignments

Query, 457 a.a., outer membrane protein oprM precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 468 a.a., RND transporter from Pedobacter sp. GW460-11-11-14-LB5

 Score =  242 bits (617), Expect = 2e-68
 Identities = 149/460 (32%), Positives = 241/460 (52%), Gaps = 15/460 (3%)

Query: 10  ILLFAGILTSCKVGKSYVRPDLHLPDSL--AQHQDTVSFGDQDWEEIYTDSTLRSLIDRA 67
           ILL A I + C V K    P++  P     A  +D+ S G    +    D T+++LID A
Sbjct: 9   ILLLALIWSGCSVSKDTALPNV-APGLFRNALPKDSSSVGGMPLKSFINDLTVQNLIDTA 67

Query: 68  LDHNKDMLIAAARIKEMAAQKRISTAALLPDIKGKVTA------ERELENHGGDAFKKS- 120
           L  N DM IA   I       + S    LP++K +V A      +  L     + F  S 
Sbjct: 68  LVKNYDMQIALKNIDAAEVLFKQSKLGYLPELKLQVAASSSRPSDNSLNGLSLNQFTGSS 127

Query: 121 --DTFEAQFLVSWELDLWGNLRWARSASIAEYLQSVEAQRALQMTIVAEVAQAYYELVAL 178
             + + A   V WE D+WG +R  ++ ++A +LQ+ EA++A+Q  +VA VAQ YY L+ L
Sbjct: 128 HIEDYNANLGVVWEADIWGKIRNQKAGALASFLQTEEARKAVQTRLVANVAQGYYNLLML 187

Query: 179 DTELDIVKQTLKAREEGVRLARIRFEGGLTSETSYRQAQVELARTATLVPDLERKISLKE 238
           D +L+I K+ LK  +  +R+  ++F+ G  +  + +QAQ +    A L+P LE+ ++L+E
Sbjct: 188 DAQLEIAKKNLKLNDSTLRIINLQFDAGQVTSLAIQQAQAQQLVAAQLIPRLEQNVTLQE 247

Query: 239 NDIAFLAGEYPNRIARSRLLQEFNFPETLPIGMPSTLLERRPDIRQAEQKLIAANAKVGV 298
           N ++ L G  P  I R   L + + P+ L  G PS +L RRPDI+ AE  L  ANAKVGV
Sbjct: 248 NALSVLIGTLPKAINRDSRLDKMSIPQELNAGFPSAMLSRRPDIKSAELALTIANAKVGV 307

Query: 299 AYTNMFPRLALTGGFGSESTSLSELLKSP---YAVMEGALLTPIFGWGKNRAALKGKKAA 355
           A  +++P L +T   G  S   S     P   + ++   +  PIF  G+ + +L+  K  
Sbjct: 308 AKASLYPSLVITASGGINSFKASNWFNVPASLFGLVGAGITQPIFQRGQLKTSLELAKID 367

Query: 356 YEAEIHSYEKTVLTAFKETRNAIVNFNKIKEVYALRANLERSAKSYMDLAQLQYINGVIN 415
            E  +  + ++VL A  E  + +    K+K  Y++     ++ +     A L + +G+ N
Sbjct: 368 REKSVIQFRQSVLNAVGEVSDELTKVEKLKTQYSIAEKRAQTLQQASKNASLLFKSGMAN 427

Query: 416 YLDVLDAQRGYFDAQIGLSNAIRDELITVVQLYKALGGGW 455
           YL+V+ AQ     +++ L+    ++L  VV LY++LGGGW
Sbjct: 428 YLEVITAQGNLLQSELELTTIKTEQLNAVVGLYRSLGGGW 467