Pairwise Alignments

Query, 457 a.a., outer membrane protein oprM precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 484 a.a., multidrug transporter from Herbaspirillum seropedicae SmR1

 Score =  202 bits (514), Expect = 2e-56
 Identities = 142/466 (30%), Positives = 227/466 (48%), Gaps = 23/466 (4%)

Query: 11  LLFAGILTSCKVGKSYVRPDLHLPDSLAQHQDTVSFG--------DQDWEEIYTDSTLRS 62
           ++ A +L  C +   Y RPD  +    A      + G        D  W +++TD +L+ 
Sbjct: 4   VMLAMLLGGCTLMPDYHRPDAPVAAHFAGADSKNAAGASSAPVVADIGWRDVFTDPSLQQ 63

Query: 63  LIDRALDHNKDMLIAAARIKEMAAQKRISTAALLPDIKGKV--TAER---ELENHGGDAF 117
           +I  AL++N+D+ +A   I++  AQ  +  AAL P IK     TA R   +L + G    
Sbjct: 64  VIALALENNRDLRVAVLNIEKARAQYGVQRAALFPSIKAATSETASRTPGDLSSTGSALT 123

Query: 118 KKSDTFEAQFLVSWELDLWGNLRWARSASIAEYLQSVEAQRALQMTIVAEVAQAYYELVA 177
            +S T    F  ++ELDL+G +R  +  ++  +L + EA+R+ Q++++AEVA A+  L +
Sbjct: 124 SRSYTATLGFS-AYELDLFGRVRSLKEQALQSFLSTAEARRSTQISLIAEVATAWLTLAS 182

Query: 178 LDTELDIVKQTLKAREEGVRLARIRFEGGLTSETSYRQAQVELARTATLVPDLERKISLK 237
               L + + TL+++     L +  FE G +S  + RQAQ  +      V     ++   
Sbjct: 183 DQDRLRLAQDTLESQSSSYALTQRSFELGSSSALTLRQAQTSVESARVDVESYTAQVDQD 242

Query: 238 ENDIAFLAGE------YPNRIARSRLLQEFNFPETLPIGMPSTLLERRPDIRQAEQKLIA 291
            N +  L G+       P  +  +RL        T+P G+PS LL+RR DI QAE+ L A
Sbjct: 243 RNALVLLVGKDLPTALLPQGLPDTRLAAASPLA-TIPPGLPSDLLQRRADIVQAERDLRA 301

Query: 292 ANAKVGVAYTNMFPRLALTGGFGSESTSLSELLKSPYAVMEGA--LLTPIFGWGKNRAAL 349
           ANA +G A    +P + LT   G+ S  L+ L K           +  PIF  G N+A L
Sbjct: 302 ANANIGAARAAFYPSITLTVNAGTASARLAGLFKGGSGSWSFVPQISLPIFDGGANQANL 361

Query: 350 KGKKAAYEAEIHSYEKTVLTAFKETRNAIVNFNKIKEVYALRANLERSAKSYMDLAQLQY 409
                + +  +  YEK + TAF+E  +A+   N +      +  L +++     L+Q +Y
Sbjct: 362 DIATVSRDISVAQYEKAIQTAFREVSDALAQRNTLGRQLQAQEALVQASDEAFRLSQARY 421

Query: 410 INGVINYLDVLDAQRGYFDAQIGLSNAIRDELITVVQLYKALGGGW 455
            +GV +YL VLD+QR  + AQ  L          +V  YK LGGGW
Sbjct: 422 HSGVDSYLTVLDSQRTLYSAQKNLIGTQLSRWTNLVTFYKTLGGGW 467