Pairwise Alignments

Query, 457 a.a., outer membrane protein oprM precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 483 a.a., multidrug transporter from Herbaspirillum seropedicae SmR1

 Score =  239 bits (610), Expect = 1e-67
 Identities = 156/458 (34%), Positives = 242/458 (52%), Gaps = 15/458 (3%)

Query: 9   AILLFAGILTSCKVGKSYVRPDLHLPDSL---AQHQDTVSFGDQDWEEIYTDSTLRSLID 65
           A L+ AG+L  C +  +Y RP   +  S    A  +  +   +  W + + D  L+ LI 
Sbjct: 17  AALVMAGVLGGCSLAPTYERPQAPVESSYPADAAGRAELQAVNLGWRQFFPDQRLQQLIA 76

Query: 66  RALDHNKDMLIAAARIKEMAAQKRISTAALLPDIKGKVTAERELENHGGDAFKKSDTFEA 125
            AL++N+D+  A   I+E  AQ +I+ A LLP++     A R        +     T   
Sbjct: 77  AALENNRDLRTAVLNIEEARAQYQIARADLLPNLNLSGNAART-RTAASQSLTGQPTISN 135

Query: 126 QFLV-----SWELDLWGNLRWARSASIAEYLQSVEAQRALQMTIVAEVAQAYYELVALDT 180
            + V     ++ELD +G +R  + A++A YL + EAQ++ Q+++VA+VAQAY    +   
Sbjct: 136 SYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQKSAQISLVAQVAQAYLAERSYAE 195

Query: 181 ELDIVKQTLKAREEGVRLARIRFEGGLTSETSYRQAQ--VELARTATLVPDLERKISLKE 238
           +L +  +TLK+R+  + LA+ R + G ++   +R  Q  VE AR A     LER+ +  E
Sbjct: 196 QLKLADETLKSRQSNLDLAQKRLDVGASTALDFRLTQTLVESARVAKT--QLERQRAQAE 253

Query: 239 NDIAFLAGEYPNRIARSRLLQEFNFPETLPIGMPSTLLERRPDIRQAEQKLIAANAKVGV 298
           N +  L G+    +  ++LL +      +P G+PS LL  RPDIR AEQ L+AANA +G 
Sbjct: 254 NALTLLVGKKIGELPPAQLLSDEKIVTDIPAGLPSDLLTNRPDIRSAEQSLLAANANIGA 313

Query: 299 AYTNMFPRLALTGGFGSESTSLSELLKSPYAVME--GALLTPIFGWGKNRAALKGKKAAY 356
           A    FPR++LTG FGS S++L  L +S         +L  PIF +G+N A L   +   
Sbjct: 314 ARAAFFPRISLTGNFGSASSTLGGLFESGSGAWSFGPSLSLPIFDFGRNSANLDLAEVRK 373

Query: 357 EAEIHSYEKTVLTAFKETRNAIVNFNKIKEVYALRANLERSAKSYMDLAQLQYINGVINY 416
              + +YEK + TAF+E  +A+V    + E    +     + +  + L  L++ NG+ + 
Sbjct: 374 NKAVVTYEKAIQTAFREVADALVARGSLDEQVKAQEAFLAAQQERLKLTDLRFKNGIASS 433

Query: 417 LDVLDAQRGYFDAQIGLSNAIRDELITVVQLYKALGGG 454
           LD LDAQR  F AQ  L  A +  L   + LYKALGGG
Sbjct: 434 LDQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGG 471