Pairwise Alignments

Query, 1038 a.a., cation efflux system (AcrB/AcrD/AcrF family) (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1064 a.a., acriflavin resistance protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  383 bits (984), Expect = e-110
 Identities = 282/1068 (26%), Positives = 507/1068 (47%), Gaps = 67/1068 (6%)

Query: 4    IIKFAVGNPVTICMVVFALLLLGKVSYDQLSVDLLPDLNNPRLFIELKAGERPPEEIEKQ 63
            I   ++  P  + +V  AL LLG +SY  L  +LLP  +N  + I        P E+E  
Sbjct: 3    ITDISIKRPSLVIVVFTALTLLGLLSYFSLGYELLPKFSNNVVSISTIYPGASPNEVENT 62

Query: 64   FVKNMESMAIRQSDVTQVSSVIKAGTARITVEYTWTKDMDEAFLDLQKAMNPFAQN--KD 121
              K +E       ++ +++SV     + +T+  T   ++D +  D Q+ +N    +  +D
Sbjct: 63   VTKKIEDAVSSMENIKKINSVSFESLSTVTITLTDAANIDISLNDAQRKVNAILSDLPED 122

Query: 122  ITELKITQHDANLSPVVLVGMSHQSITDMAELRKIAESYIRNELIRLEGVAEVTLSGEEV 181
            +    +++   +  PV+   MS  +  D      + +  I   + R+ G+A+V L G   
Sbjct: 123  VKTPSLSKFSLDDLPVIT--MSASANMDDITFYDLIDKRIAPVISRVSGIAQVNLVGGSE 180

Query: 182  STLTIQTDPYKLDAFQLKIEDIASRIESNNQSISGGRVSELGLQYLVKSSSLFASEDDFE 241
              + +  +  KL  + L +  +   I S+N     G V       L++ S  + S ++  
Sbjct: 181  REIQVSLNADKLQGYNLSVPQVQQLILSSNLDFPTGSVKTQNQDVLIRLSGKYRSMEELR 240

Query: 242  NLIVGYKAIQQEEASGNNASGTATANSNKAPVFLKEVATVQFLNARPENIVRINGKRSIG 301
            NL++                   T   + A + L +VA VQ      E + RI+ K SI 
Sbjct: 241  NLVL-------------------TTTKDGAQIRLGDVADVQDSQKETEKLARIDRKASIA 281

Query: 302  LSIYKEMRFNTVKVVDEVTRQLAVI--ENALPGYHFQVISNQGTFIKSAIGEVKSSAVLG 359
            + I K+   N V+V   V   +A +  E A      +++++   F   +   V    +L 
Sbjct: 282  IQIIKQSDANAVEVSKGVHAIIAKLKTEYAANKLDIRIVNDSSIFTLESADAVIHDLILA 341

Query: 360  VILAIVVLFVFLRRMGTTLIVSLAIPISIVATFNLMFFNGLSLNIMTLGGLALGAGMLVD 419
            VIL   V+  FL  +   LIV ++IP+S++ATF  +   G +LN+M+L GL+L  G+LVD
Sbjct: 342  VILVAFVMLFFLHSLRNALIVMVSIPVSLIATFIGISLFGFTLNLMSLLGLSLVVGILVD 401

Query: 420  NAIVVIESIFRNQEKGLSIKEAAINGTAEVANAVIASTLTTIVVFLPIVYLHGASGELFK 479
            +AIVV+E+I R+ E G +   AA + T E+   V++ T   +VVF PI    G    + +
Sbjct: 402  DAIVVLENIQRHMEMGKNKVRAASDATREIGFTVVSITFVIVVVFFPIAVSTGLVSNILR 461

Query: 480  DQAWTVTFSLVSSLFVAILVIPMLYIQLSGKKVKLEEVKSIRITG-----YSRVLRKLIQ 534
                 V  + + SL  +  ++P+++ +      KLE ++   + G     + + L+K   
Sbjct: 462  QFCIVVIIATLLSLVASFTIVPLIFSRFG----KLERIEGKNLFGRFILWFEKQLKKFTL 517

Query: 535  -----RRWLVIGMAVLLLIVT-------GLLTP-FIGTEFMPRAESKTFTAVIKMPEGTQ 581
                   W +   A+ L+IV        GLL   FIG+EF P+++   F   +++P+   
Sbjct: 518  WITSILTWSLNHKALTLIIVVVMFFSSCGLLVGGFIGSEFFPKSDKGEFLVQLELPKDAS 577

Query: 582  MERTSAAVGNLEELLYAIVGGDSLCTVYSHIGEGSGSENAIFEGENTAMMKVILSPECTL 641
            +E+T+      E  L        L T    +G+ +G     F G      K  ++ +   
Sbjct: 578  LEQTNFLTQKAEAFLDKQPEITQLITT---VGQSTGD----FGGTQATAYKSEINVKLVE 630

Query: 642  SPEKV-IASFVESAKNPDGL--ELTIQQDENSLSSLLG-SEGAPIVVEVKGEELDEIAQL 697
              ++  ++S + + K    L  EL   + +    S+LG +E API + V G +LD   + 
Sbjct: 631  RDQREGVSSDIFATKMSRALAKELIGAKVKTVPISILGIAENAPIQLVVMGSDLDSALKY 690

Query: 698  TEEVKERMIGVNGIYDVITSVEDGAPEVVISIDRTIAGINNLSVAMVIEQLKQQLSGKEV 757
             E  ++ +  + G  ++  SVE G PE+ + +DR       L++  V   ++   +G   
Sbjct: 691  AEGAQKVLAAIPGATEIKLSVEKGTPEINVQVDRDKMSAVGLTLQTVGSTMQTAFAGNTD 750

Query: 758  GKMEYRGEMRDIVIKVPDIPLSSL----GALVIKSGTQEFVLQEIVTITHGQAPKEILRR 813
            GK        DI I+  +    ++      + + S  ++  L +  TIT G  P ++ R 
Sbjct: 751  GKYRKGEYEYDINIQYQNFNRQNIDDVRNLIFVNSDGKQIKLSQFATITEGSGPSQLERL 810

Query: 814  NQSRIGKVMANMDASKSLDKVA---AEVRETVKG--IELPANYSITVTGEEEKRQESMNS 868
            N+S    V A      +   VA   A++ E  K   ++ P   S +  G++E + E   +
Sbjct: 811  NKSTSVSVKAQSIGRPTGTVVAEFQAKLEELQKNGKLKAPIGVSYSWAGDQENQSEGFGT 870

Query: 869  LLFALMLSVVLVYMVMASQFESLLHPFTILLTIPLAVVGAILLFFITGTTINMMGVIGIV 928
            L  AL+ S++LVY++M + ++S ++P  ++ ++PLAV+GA+L   +T  +I +  ++G++
Sbjct: 871  LGIALLASIILVYLIMVALYDSFIYPLVVMFSLPLAVIGALLALALTNNSIGIFTILGLI 930

Query: 929  MLGGIAVNNSIILVDRINQLSQAGMELTDAIVEAGQQRIRPIIMTTLTTILAMLPMTFSF 988
            ML G+   N+IILVD  N L   G E  +A+V A   R+RPI+MTT+  +  MLP+  + 
Sbjct: 931  MLMGLVAKNAIILVDFTNHLKAEGKETKEALVLANHARLRPILMTTIAMVFGMLPIALAS 990

Query: 989  GEGASLRSPMAIAVIGGLITSTLMSLMVIPCVYYVLENIKRRINRRTK 1036
            G GA  ++ +A  ++GGL +S  ++L+V+P VY + + +  R+    K
Sbjct: 991  GAGAEWKNGLAWVIVGGLTSSLFLTLIVVPVVYLMFDRMLERLGFNKK 1038