Pairwise Alignments

Query, 1038 a.a., cation efflux system (AcrB/AcrD/AcrF family) (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1036 a.a., acriflavin resistance protein (RefSeq) from Shewanella loihica PV-4

 Score =  337 bits (863), Expect = 3e-96
 Identities = 275/1075 (25%), Positives = 514/1075 (47%), Gaps = 99/1075 (9%)

Query: 3    NIIKFAVGNPVTICMVVFALLLLGKVSYDQLSVDLLPDLNNPRLFIELKAGERPPEEIEK 62
            N+ K +  NP    + +  + + G ++  +L + LLPD+  P++ +        P+E+E 
Sbjct: 2    NLTKLSTNNPAGTLVALLLIAIFGVLAIGKLPIQLLPDIQRPQISVFNNWRSAAPQEMES 61

Query: 63   QFVKNMESMAIRQSDVTQVSSVIKAGTARITVEYTWTKDMDEAFLDLQKAMN-----PFA 117
              ++  E++  +   V +++S I  G   IT+ +    DM    +++  A+N     P  
Sbjct: 62   NIIEPQENVLRQVPGVVEMTSNISQGFGGITLTFEVGSDMQAGMINVINALNQTPPRPLD 121

Query: 118  QNKDITELKITQHDANLSPVVLVGMSHQSITDMAELRKIAESYIRNELIRLEGVAEVTLS 177
             N+    +       NL+ +++        TD A+ +K+ +  +   L  + GV  V L 
Sbjct: 122  ANEPFINVGGGNGAPNLASLLIRMAPDNPATDFAQYQKLIDDVVEPRLRLISGVGSVRLQ 181

Query: 178  GEEVSTLTIQTDPYKLDAFQLKIEDIASRIESNNQSISGGRVSELGLQYLVKSSSLFASE 237
                  L I+ DPY+  A  + ++ + S + S    ISGG  +    QY V+    +  E
Sbjct: 182  SRLPKELHIEFDPYRAAALGITLDQLRSTL-SRAADISGGTANVGRRQYTVRFIGQYTPE 240

Query: 238  DDFENLIVGYKAIQQEEASGNNASGTATANSNKAPVFLKEVATVQFLNARPENIVRINGK 297
            +   NLIV Y                    +   P++L E+A V+  +A  +   + NG 
Sbjct: 241  N-LGNLIVTY--------------------NEGRPIYLNELADVEVSSADVQGFTKRNGY 279

Query: 298  RSIGLSIYKEMRFNTVKVVDEVTRQLAVIENAL---PGYHFQVISNQGTFIKSAIGEVKS 354
             +  +++      NTVKV+D V   +A +        G    +  +    IK AI  VK 
Sbjct: 280  PAYYMTVEGTFDANTVKVLDGVNEAIAELNQGPLKEAGLVLDLSFDASVHIKRAIWLVKG 339

Query: 355  SAVLGVILAIVVLFVFLRRMGTTLIVSLAIPISIVATFNLMFFNGLSLNIMTLGGLALGA 414
            +  +GV+LA+V+L+ FLR    TL+++  IP++++  F  +   G +LN+++L GLA   
Sbjct: 340  NLAIGVVLALVILYAFLRSFRATLMIASTIPVALLIAFFFLEMMGRTLNVISLAGLAFAV 399

Query: 415  GMLVDNAIVVIESIFRNQEKGLSIKEAAINGTAEVANAVIASTLTTIVVFLPIVYLHGAS 474
            G+++D AI+V E+I R  ++G  I+EA   GT +V  A++AST TT+ +FLPI+++ G  
Sbjct: 400  GLVLDAAIIVQENIVRILQQGTPIREAIAKGTDQVKGALLASTATTVAIFLPILFMPGVE 459

Query: 475  GELFKDQAWTVTFSLVSSLFVAILVIPMLYI-----------QLSGKKVKLEEVKSIRIT 523
            G+LF D A T++ ++VSS   AI +IP+  +           Q SG+  +       R+T
Sbjct: 460  GQLFSDLALTLSVAVVSSFISAITLIPVFSLLWLKLSPQDDGQQSGRLWRWISATVQRLT 519

Query: 524  GYSRVLRKLIQRRWLVIGMAVLLLIVTGLLTPFIGTEFMPRAESKTFTAVIKMPEGTQME 583
            G ++  R +     L++G A+L    T +L P    +F+P+A S    A   +P G  ++
Sbjct: 520  GDTK--RAVFWCVTLILGAAML----TAVLMP--RPDFLPQARSDGIFAFFALPPGANVK 571

Query: 584  RTSAAVGNLEELLYAIVGGDSLCTVYSHIGEGSGSENAIFEGENTAMMK----VILSPEC 639
                 VG++      I+  + L   Y         +    +G N +M      + + PE 
Sbjct: 572  TLEKEVGDV------II--ERLKPYYDK------EKQPYIKGYNFSMYSAFNVLFIYPED 617

Query: 640  TLSPEKVIASFVES--AKNPDGLELTIQQDENSLSSLLGSEGAPIVVEVKGEELDEIAQL 697
                + +I    +      PD    T   +  SL     + G  I ++++G +++ + + 
Sbjct: 618  PSQADAMIELLNKEILVGLPDTQAFT---NRGSLLQFGFNGGRAINIDLQGADMEALMET 674

Query: 698  TEE----VKERMIGVNGIYDVITSVEDGAPEV-VISIDRTI--AGINNLSVAMVIEQLKQ 750
              +    ++E + G   +   I  +    PE+ +I  +R +  AG++ + +A  I   + 
Sbjct: 675  AGKGMGLIQEALPG--AVVRPIPGLSMAQPELQLIPNERRLAQAGVDRIQIANAI---RA 729

Query: 751  QLSGKEVGKMEYRGEMRDIVIKVP--DIP--LSSLGALVIKSGTQEFVLQEIVTITHGQA 806
              SG  VG+     E  D+++K P   +P  LS+       +G Q   + E+ T+     
Sbjct: 730  YTSGLFVGEYFDGNERMDVLLKGPKWQVPEQLSATPVYTQAAGIQ--TIGELATLKRTVG 787

Query: 807  PKEILRRNQSRIGKVM----ANMDASKSLDKVAAEVRETVKGIELPANYSITVTGEEEKR 862
            P ++ R N  R   ++    A+M   ++L+K+      T++   LP N S+   G  +K 
Sbjct: 788  PTQLQRVNGKRSVSLLIFPPADMSLDEALEKLNQSAVPTLRA-SLPENSSLGYRGSADKL 846

Query: 863  QESMNSLLFALMLSVVLVYMVMASQFESLLHPFTILLTIPLAVVGAI----LLFFITGTT 918
              ++  +     L+VV+++++MA+ F+S      +LL++PLA+ G +    LL   +  +
Sbjct: 847  DSTIKDMGANFALAVVILFLLMAAMFKSAKDSLLVLLSMPLAICGGVVSLRLLNLFSFQS 906

Query: 919  INMMGVIGIVMLGGIAVNNSIILVDRINQLSQAGMELTDAIVEAGQQRIRPIIMTTLTTI 978
            ++++ +IG ++L G+ VNN+I+LVD+  Q  +   ++  AI +A   R RP+ M+TLT+I
Sbjct: 907  LDLLTMIGFIILLGLVVNNAILLVDQTRQSYRETPDIDLAIAQAVATRARPVYMSTLTSI 966

Query: 979  LAMLPMTFSFGEGASLRSPMAIAVIGGLITSTLMSLMVIPCVYYVLENIKRRINR 1033
              MLP+    G G+ +   +A  ++GG+  S L +L+++P +  +   +    NR
Sbjct: 967  FGMLPLMLVPGVGSEIYRGLAAVIVGGMTFSALFTLILMPSLLRLTHRLSPVTNR 1021