Pairwise Alignments

Query, 1127 a.a., transcription-repair coupling factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1171 a.a., transcription-repair coupling factor from Sinorhizobium meliloti 1021

 Score =  504 bits (1297), Expect = e-146
 Identities = 272/620 (43%), Positives = 392/620 (63%), Gaps = 16/620 (2%)

Query: 429  LKELNQFTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVFQNEDVVFVSIHSLHKVS 488
            + E+     G YVVH +HGIGRF GL  I       + L+LV+ ++  +F+ + ++  +S
Sbjct: 497  IAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLELVYADDAKLFLPVENIELLS 556

Query: 489  KYKGKDGEAPRLNKLGTGAWEKLKDRTKAKIKDIARDLIKLYSQRRQEKGFSYSPDSFLQ 548
            +Y G +G    L+KLG  AW+  K + K ++ D+A  LI++ ++R        +    + 
Sbjct: 557  RY-GSEGTDAVLDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHTRHAPVLAAQDGVY 615

Query: 549  RELEASFIYEDTPDQSKATMEVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNK 608
             E  A F Y++T DQ  +   V+ D+   RPMDRLVCGDVGFGKTEVA+RAAF A  +  
Sbjct: 616  DEFAARFPYDETEDQLNSIDAVRDDLGRGRPMDRLVCGDVGFGKTEVALRAAFIAAMNGV 675

Query: 609  QVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRARTAAQSKAVLKGLKEGEVSILIGT 668
            QVAV+VPTT+LA QHF+TF +R +GLP R++  SR   +       K + EG+  I++GT
Sbjct: 676  QVAVVVPTTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKDLALTKKEVAEGKTDIVVGT 735

Query: 669  HRILGKDVQFKDLGLLIIDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGA 728
            H +LG  ++F +LGLLIIDEEQ FGV  KE+L++LK +V  LT++ATPIPRTLQ +L G 
Sbjct: 736  HALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSATPIPRTLQLALTGV 795

Query: 729  RDLSVISTPPPNRYPIQTEVHTFNEEVITDAINFEMSRNGQVFFVNNRIANLPELKVMIE 788
            R+LS+I+TPP +R  ++T +  F+  VI + +  E  R GQ F+V  R+++LPE+   ++
Sbjct: 796  RELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYVCPRVSDLPEIHDFLK 855

Query: 789  RHIPDCRVAIGHGQMEPTQLEQIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQN 848
              +P+ +VA+ HGQM  T+LE I+  F    YDVLL+TTI+ESG+D+P ANT+I+++A  
Sbjct: 856  SDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADM 915

Query: 849  FGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTAEGKRRLQAIENFSDLGSGIHIAMQDL 908
            FGL+ L+Q+RGRVGRS  +AF     P   +LT   +RRL+ +++   LG+G  +A  DL
Sbjct: 916  FGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLKVLQSLDTLGAGFQLASHDL 975

Query: 909  DIRGAGNLLGAEQSGFIADLGYETYQKILAEAVHELRNDEFAELYADEIKGEGQISGEEF 968
            DIRGAGNLLG EQSG I ++G+E YQ++L EAV EL+ +E       EI   G       
Sbjct: 976  DIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKGEE-------EIHDTGW------ 1022

Query: 969  VDECQIESDLELLLPATYVTGSSERMLLYRELDGLTLDKDVDAFRFRLEDRFGPVPPETQ 1028
                QI     +++P  YV   + R+ LYR L  LT  K++D F   L DRFGP+P E Q
Sbjct: 1023 --SPQISVGTPVMIPEEYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLPTEVQ 1080

Query: 1029 ELLRIVPLRRLAARLGVEKV 1048
             LL+IV ++ L     VEK+
Sbjct: 1081 HLLKIVYVKSLCRTANVEKL 1100



 Score = 60.5 bits (145), Expect = 8e-13
 Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 14/199 (7%)

Query: 26  ASVQTIFCGGLCASSASLFSSVLVKQDVCPFVFVLGDLEEAGYFYHDLTQVLGTEK---- 81
           A+ + I  G +   + +L  + L +    P  ++L D ++      DL QVLG       
Sbjct: 14  AATREITIGPVPTGAEALVLAELARAGA-PVAYILSDGQKVA----DLEQVLGFVAPDIP 68

Query: 82  VFFFPS----SFRRSIKYGQKDAANEILRTEVLSRLQKGEEGLCIVTYPDALAEKVVSRK 137
           V   P      + R        A      + +++  +K    + +VT   AL +++  + 
Sbjct: 69  VLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHRRKPHPAIVLVTINAAL-QRISPQD 127

Query: 138 ELSDKTLKLNVGEKLDTTFITDVLHSYGFEYVDYVYEPGQYAVRGSIIDVFSFASEYPYR 197
            +         G ++    +   L   GFE V  V E G++AVRG I+DV+   S  P R
Sbjct: 128 VIESLAFTARPGNQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVPGSGEPLR 187

Query: 198 IDFFGDEVESIRTFEVESQ 216
           +DFFGD +E+IR+F+  SQ
Sbjct: 188 LDFFGDTLEAIRSFDPASQ 206