Pairwise Alignments

Query, 1127 a.a., transcription-repair coupling factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1152 a.a., transcription-repair coupling factor from Rhodanobacter denitrificans MT42

 Score =  521 bits (1343), Expect = e-152
 Identities = 271/688 (39%), Positives = 426/688 (61%), Gaps = 24/688 (3%)

Query: 376  DKIQFTPVVRTIHEGFVDHTLHLCIFTDHQLFDRFHKYNLKSDKARSGKVALS------L 429
            D  +F   + ++ +GF      + + T+ +L+       ++S++ R  +   +      +
Sbjct: 420  DAQRFAITIASLEQGFALTKPAITVLTERELYGE----RVRSERERKRRRGTARDPEAII 475

Query: 430  KELNQFTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVFQNEDVVFVSIHSLHKVSK 489
            ++L + TPG  +VH DHG+GR+ GLV +  G    E L + +   D ++V +  L  VS+
Sbjct: 476  RDLTELTPGAPIVHVDHGVGRYQGLVSMDVGGMDGEFLTIEYARGDKLYVPVAQLGLVSR 535

Query: 490  YKGKDGEAPRLNKLGTGAWEKLKDRTKAKIKDIARDLIKLYSQRRQEKGFSYSPDSFLQR 549
            Y G   E   L+ LG  AWE+ + +   K++D+A +L+ +Y+QR+   G S   D  L  
Sbjct: 536  YSGTAPELAPLHSLGGDAWERARRKAAEKVRDVAAELLAIYAQRQARGGESLPIDRQLVE 595

Query: 550  ELEASFIYEDTPDQSKATMEVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQ 609
            E  +SF +E+TPDQ  A   V  D+ + R MDR++CGDVGFGKTEVA+RAAF      +Q
Sbjct: 596  EFGSSFPFEETPDQESAIEAVLDDLAAPRAMDRVICGDVGFGKTEVALRAAFATATAGRQ 655

Query: 610  VAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRARTAAQSKAVLKGLKEGEVSILIGTH 669
            VAVLVPTT+LA QH++ F +R    P RV+ LSR ++A +    LK L +G++ +++GTH
Sbjct: 656  VAVLVPTTLLAQQHYRNFADRFADWPVRVDVLSRFKSAKEVNEALKRLADGQIDVIVGTH 715

Query: 670  RILGKDVQFKDLGLLIIDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGAR 729
            ++L  DV+FK+LGL+I+DEEQ+FGV  KE+L++L+  VD LTMTATPIPRTL  ++ G R
Sbjct: 716  KLLQPDVKFKNLGLVIVDEEQRFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMAGLR 775

Query: 730  DLSVISTPPPNRYPIQTEVHTFNEEVITDAINFEMSRNGQVFFVNNRIANLPELKVMIER 789
            DLS+I+TPP +R  ++T +  ++   I +A+  E+SR GQV+F++N + ++      +E 
Sbjct: 776  DLSLIATPPAHRTAVRTFISAWDPATIREALQRELSRGGQVYFLHNEVQSIERTVRELEE 835

Query: 790  HIPDCRVAIGHGQMEPTQLEQIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNF 849
             +PD R+ I HGQM   +LE ++ DF    ++VL+ TTIIE+GIDIP ANTIII++A  F
Sbjct: 836  LVPDARIRIAHGQMPERELEGVMADFHRQRFNVLVCTTIIETGIDIPTANTIIIDRADRF 895

Query: 850  GLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTAEGKRRLQAIENFSDLGSGIHIAMQDLD 909
            GL+ LHQ+RGRVGRS+ +A+ YL+ P   S+TA+ ++RL+A+ +  +LG+G  +A  DL+
Sbjct: 896  GLAQLHQLRGRVGRSHHRAYAYLVVPDRRSITADAQKRLEALASLEELGAGFTLATHDLE 955

Query: 910  IRGAGNLLGAEQSGFIADLGYETYQKILAEAVHELRNDEFAELYADEIKGEGQISGEEFV 969
            IRGAG LLG EQSG I ++G+  Y ++L  AV  L++ +  +           +S E   
Sbjct: 956  IRGAGELLGDEQSGQIQEIGFGLYTELLDRAVRALKSGKVPDF---------DLSSEH-- 1004

Query: 970  DECQIESDLELLLPATYVTGSSERMLLYRELDGLTLDKDVDAFRFRLEDRFGPVPPETQE 1029
             E ++E  L  L+P  Y+     R+ LY+ +     + ++   +  + DRFG +P  T++
Sbjct: 1005 -ETEVELHLPALIPDDYLPDVHHRLTLYKRIASARSEDELRDLQVEMIDRFGLLPEPTRQ 1063

Query: 1030 LLRIVPLRRLAARLGVEKVFL--KGGRM 1055
            L  +  L+ +A  LG+ K+     GGR+
Sbjct: 1064 LFAVASLKLMATPLGIRKLDFGANGGRI 1091



 Score = 82.0 bits (201), Expect = 2e-19
 Identities = 56/175 (32%), Positives = 88/175 (50%), Gaps = 5/175 (2%)

Query: 57  VFVLGDLEEAGYFYHDLTQVLGTEKVFFFPSSFRRSIKYGQKDAANEIL--RTEVLSRLQ 114
           V V  D + A     +L    G   V  FP     ++ Y       EI+  R   L RL 
Sbjct: 44  VVVARDTQRAQALEAELKIFAGGLPVLHFPDW--ETLPYDVFSPHPEIVSQRVATLYRLP 101

Query: 115 KGEEGLCIVTYPDALAEKVVSRKELSDKTLKLNVGEKLDTTFITDVLHSYGFEYVDYVYE 174
             + G+ +V     L +++     ++   L L  G+KLD       L + G+ +V  V E
Sbjct: 102 GVKRGVLVVPVA-TLMQRIAPHSHITGSGLVLAKGQKLDLAGEQRRLEASGYRHVPQVAE 160

Query: 175 PGQYAVRGSIIDVFSFASEYPYRIDFFGDEVESIRTFEVESQLSRERKEGVAIVP 229
           PG +AVRG+++D+F   +  PYRI+ F DEVESIR+F+ E+Q S++  + V ++P
Sbjct: 161 PGDFAVRGALLDIFPMGTAEPYRIELFDDEVESIRSFDPETQRSQQPVDRVELLP 215