Pairwise Alignments

Query, 1127 a.a., transcription-repair coupling factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1155 a.a., transcription-repair coupling factor Mfd from Caulobacter crescentus NA1000

 Score =  513 bits (1321), Expect = e-149
 Identities = 289/728 (39%), Positives = 426/728 (58%), Gaps = 34/728 (4%)

Query: 337  FDLVAGSFKDYLEQGYSLYICSDSTKQTDRIRAIFEDRG-DKIQFTP------------- 382
            F+  A   K    QG  +   S S   ++R+  +  D G  KI +               
Sbjct: 376  FEATADHAKALAAQGKRVLFASWSEGSSERLGTMLADHGLKKIPYAGYWQAAKANDPKVP 435

Query: 383  --VVRTIHEGFVDHTLHLCIFTDHQLFDRFHKYNLKSDKARSGKVALSLKELNQFTPGDY 440
              VV  +  GF   +L +   TD  L DR  +   K       + A  L E +  TPGD 
Sbjct: 436  QRVVLPLDHGFETDSLAVISETDI-LGDRLARPRKKR------RAANFLAEASALTPGDL 488

Query: 441  VVHTDHGIGRFSGLVRIPNGDTTQEVLKLVFQNEDVVFVSIHSLHKVSKYKGKDGEAPRL 500
            VVH DHGIGR+ GL  +       + L L++  E  +++ + ++  +++Y   D E  +L
Sbjct: 489  VVHIDHGIGRYEGLKTLDVQGAPHDCLDLLYGGEAKLYLPVENIDLLTRYGAADAENVQL 548

Query: 501  NKLGTGAWEKLKDRTKAKIKDIARDLIKLYSQRRQEKGFSYSPDSFLQRELEASFIYEDT 560
            +KLG  AW+  K + K +++ +A  LI++ + R+ +      P S +  E  A F YE+T
Sbjct: 549  DKLGGAAWQGRKAKAKERLRVMAEGLIQIAAARQLKTVEETDPPSGVFDEFCARFPYEET 608

Query: 561  PDQSKATMEVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLA 620
             DQ  A  +V  D+ S +PMDRL+CGDVGFGKTEVA+RAAF      KQVA++ PTT+LA
Sbjct: 609  DDQLSAIHDVLEDLSSGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQVAIVCPTTLLA 668

Query: 621  YQHFQTFRERLKGLPCRVEYLSRARTAAQSKAVLKGLKEGEVSILIGTHRILGKDVQFKD 680
             QH++TF++R +G P +V  LSR  T  ++    +GL  G+  I++GTH IL K V FKD
Sbjct: 669  RQHYKTFKDRFQGWPVKVTRLSRLVTGKEAAETREGLANGQFEIVVGTHAILSKQVSFKD 728

Query: 681  LGLLIIDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTPPPN 740
            LGL+I+DEEQ FGV  KEKL++L+ +V  LT+TATPIPRTLQ +L G R++S+I+TPP +
Sbjct: 729  LGLVIVDEEQHFGVKHKEKLKELRADVHMLTLTATPIPRTLQMALSGIREMSIIATPPVD 788

Query: 741  RYPIQTEVHTFNEEVITDAINFEMSRNGQVFFVNNRIANLPELKVMIERHIPDCRVAIGH 800
            R  ++T +  F+   + +A+  E  R GQ ++V  RI +L +++  +   +P+ +  +GH
Sbjct: 789  RLAVRTYISPFDPVTLREALLREKYRGGQSYYVVPRIKDLEDIEKFLRTQVPEVKFVVGH 848

Query: 801  GQMEPTQLEQIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGR 860
            GQM  TQLE ++  F    YDVLLATTI+ESG+DIP+ANT+I+++A  FGL+ L+Q+RGR
Sbjct: 849  GQMAATQLEDVMTAFYEGQYDVLLATTIVESGLDIPSANTLIVHRADMFGLAQLYQIRGR 908

Query: 861  VGRSNKKAFCYLLAPPLSSLTAEGKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLLGAE 920
            VGRS  +A+ YL  P   SLT   ++RLQ +++   LG+G  +A  DLD RG GNLLG E
Sbjct: 909  VGRSKARAYAYLTTPVEKSLTPSAEKRLQVLQSLDSLGAGFQLASHDLDQRGGGNLLGDE 968

Query: 921  QSGFIADLGYETYQKILAEAVHELRNDEFAELYADEIKGEGQISGEEFVDECQIESDLEL 980
            QSG I ++G E YQ++L +AV ELR  +  E   ++ +G             QI +   +
Sbjct: 969  QSGHIKEIGVELYQQMLEDAVAELRQRQGQEALLED-RGWSP----------QINTGAAV 1017

Query: 981  LLPATYVTGSSERMLLYRELDGLTLDKDVDAFRFRLEDRFGPVPPETQELLRIVPLRRLA 1040
            ++P  YV   + R+ LYR L       D +A    + DRFGP+PPET  LL++V ++ L 
Sbjct: 1018 MIPDDYVPDLNVRLSLYRRLSEAEQAADREALAAEMIDRFGPLPPETDSLLKVVAIKGLC 1077

Query: 1041 ARLGVEKV 1048
                V K+
Sbjct: 1078 REANVAKI 1085



 Score = 74.3 bits (181), Expect = 5e-17
 Identities = 59/206 (28%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 34  GGLCASSASLFSSVLVKQDVCPF-----VFVLGDLEEAGYFYHDLTQVLGTEKVFFFPSS 88
           GGL  + A      LV  D+         FV  D   AG F   L       +   FPS 
Sbjct: 13  GGLTLAGAPEGFDALVMADIARARGGLTAFVARDTARAGAFIDALKFFAPEIEAVLFPSW 72

Query: 89  FRRSIKYGQKDAANEILRTEV--LSRLQKG---EEGLCIVTYPDALAEKVVSRKELSDKT 143
               + Y +   ++ +  T +  LSRL +G    +   +V    AL ++V +++ L   +
Sbjct: 73  --DCLPYDRIGPSSGVSATRMATLSRLARGLGESKAAILVIAAPALLQRVPTKEVLLRAS 130

Query: 144 LKLNVGEKLDTTFITDVLHSYGFEYVDYVYEPGQYAVRGSIIDVFSFASEYPYRIDFFGD 203
               VG  +D   +       G+     V E G++A+RG +IDV+  A+E P R+D FGD
Sbjct: 131 YAAKVGANVDIKDLERYFAVNGYTRASTVSERGEFAIRGGVIDVYPPAAEEPVRLDLFGD 190

Query: 204 EVESIRTFEVESQLSRERKEGVAIVP 229
            +ESIR F+ E+Q S ++ + + ++P
Sbjct: 191 TLESIRAFDPETQRSTKQLKEIDLLP 216