Pairwise Alignments

Query, 475 a.a., Na(+)/H(+) antiporter (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 506 a.a., Na+/H+ antiporter NhaC (RefSeq) from Shewanella loihica PV-4

 Score =  365 bits (936), Expect = e-105
 Identities = 189/471 (40%), Positives = 296/471 (62%), Gaps = 3/471 (0%)

Query: 3   KAPSPLVSLLPIVVLVILLFATIRVFGSDALNGGSQVSLLTTTAICILIGMAFYKIPWKD 62
           K P+ L +L+PI+ LV +L A++ +F SD+  G +Q++L+    I ++IG+      WK+
Sbjct: 24  KQPTLLDALIPIIALVCMLTASVYLFSSDSSYGANQIALIMAACITLVIGVK-NGYSWKE 82

Query: 63  YELAITNNVAGVTTAIIILLIIGALSGIWMISGVVPTLIYYGMQIIHPSFFLTSTCIICV 122
            E  I  +V+  T A++IL  +G+L G W+++G VPT+I+YGM+I++P +F  ++C++C 
Sbjct: 83  MEAGIVKSVSLATGALLILFSVGSLIGTWILAGTVPTMIFYGMKILNPDYFYAASCLLCA 142

Query: 123 LISVMTGSSWTTIATIGIALMGIGKAQGFEEGWIAGAIISGAYFGDKVSPLSETTILAAS 182
           ++++  GSSWT   T+GIAL+G+  A G      AGAIISGAYFGDK+SP+S+TT LA +
Sbjct: 143 VVALSIGSSWTVAGTLGIALIGVAGAMGLSVEITAGAIISGAYFGDKMSPMSDTTNLAPA 202

Query: 183 VTDTPLFRHIRYMMITTVPSLIITLIIFTVAGLSHDASN-TQHIAEVAAALNEKFHITPW 241
           V  + LF HIR+M+ TT PS+++ LI F   GL+ D+S+    +A   A +  ++H    
Sbjct: 203 VAGSELFGHIRHMVWTTTPSILLALIGFLFIGLNSDSSSVATDLAATMARIETQYHPGLH 262

Query: 242 LLIIPIATGILIARKVPSIITLFLSTLLAGIFALIFQPD-LLREISGAAVSNFDSLFKGL 300
           LL+  +   +L  +K+P+  T+ L TL   I A +FQ D +++ ++  ++    +L KG+
Sbjct: 263 LLLPLLVVLVLAYKKLPAFPTVILGTLAGAICAALFQFDGVIKFVNDDSLPTMVALVKGI 322

Query: 301 MMTIYGKTSLQTDNAVLTDLIATRGMSGMMNTIWLILCAMCFGGAMTASGMLGSITSLFV 360
            + ++   +  T +  L  L++  GMS M+NT+WLILCAM FGG M  +G+L  +    +
Sbjct: 323 WVAMFDGYTANTGDKTLDSLLSRGGMSSMVNTVWLILCAMAFGGVMEKTGLLQRLLQGVL 382

Query: 361 RFMKKTVSVVSATVCSGLFLNLATADQYISIILTGNMFRDIYAKKGYESCLLSRTTEDSV 420
           R +K + S++  T+ S +  NL T DQ+I+I+L G M +  Y K G     LSR  EDS 
Sbjct: 383 RLVKSSGSLIITTLASCIGANLITGDQFIAILLPGRMLKVEYEKHGLAPVNLSRALEDSA 442

Query: 421 TVTSVLIPWNTCGMTQATILSVPTLVYLPYCFFNIISPLMSIAVAAIGYKI 471
           T+TS L+PWNTCG   A+ L V T+ YLP+ FFN+I P +S A A    KI
Sbjct: 443 TITSPLVPWNTCGAYMASTLGVATIAYLPFAFFNLICPFVSAAYAYYDIKI 493