Pairwise Alignments

Query, 355 a.a., putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 377 a.a., tRNA-specific 2-thiouridylase MnmA (RefSeq) from Shewanella amazonensis SB2B

 Score =  226 bits (577), Expect = 6e-64
 Identities = 131/355 (36%), Positives = 192/355 (54%), Gaps = 14/355 (3%)

Query: 7   LSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDGAEYMDCSAEEDIEMSTAIARKYGLSLEV 66
           +SGGVDSSV  +LL +QGY+    ++K   +      C+A ED++ + A+  K G+ L  
Sbjct: 23  MSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDTDEYCAAAEDLKDAQAVCDKLGIKLHT 82

Query: 67  VDLHKEYWENVAAYAIDKIKKGLTPNPDVMCNKLIKFGCFEQQVGK--NFDFTATGHYAT 124
           V+   EYW+NV  Y + + K G TPNPD+MCNK IKF  F +      + D+ A GHY  
Sbjct: 83  VNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDILDADYIAMGHYVR 142

Query: 125 TIRQDGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEVREIASRAGLPSAR 184
               DGKT +    D  KDQ+ FL  + + QV++ +FP+G L K EVR IA   GL +  
Sbjct: 143 RRDTDGKTEMLRGIDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEVRRIAEEQGLITHD 202

Query: 185 RKDSQGICFLGKINYNDFVRRFLGEREGAIIELETGKKVGTHRGYWFHTIGQRKGLGLSG 244
           +KDS GICF+G+  + DF+  +L  + G  IE   G  +G H G  +HT+GQRKGLG+ G
Sbjct: 203 KKDSTGICFIGERKFKDFLATYLPAQPGN-IETPEGDIIGRHEGLMYHTLGQRKGLGIGG 261

Query: 245 ------GPWFVIKKDVEENIIYVSHGYGVETQFGSEFRINDFHFITENPWKDAGKEIDIT 298
                  PW+V+ KD+  N++ V+ G+          R+N  H++      D G  I + 
Sbjct: 262 MKNSNDDPWYVVDKDMARNVLVVAQGHEHPRLMSKGMRVNQLHWVDRTGPAD-GATISVK 320

Query: 299 FKIRHTPEFTKGKLVQEEGGQFRILSSEKLQGIAPGQFGVIYDEEAGICVGSGEI 353
            + R        K++ E+     +L  E +  + PGQ  V YD E  +C+G G I
Sbjct: 321 TRYRQQDIPCTVKIIDEQ--TIEVLFDEPVAAVTPGQSAVFYDGE--VCLGGGII 371